XLOC_012754 (si:dkey-242h9.3)


Basic Information

Item Value
gene id XLOC_012754
gene name si:dkey-242h9.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19120984 ~ 19124312 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025460
ggtgGTACAAAAGACCAGAGTAAAGCCACGATGTTTCACATTGTTGTTTTTGACAAAACTAATGAGGTAGAAGTTGTGCCTTCCATCTGGATTAAAAATGGAGAGTGCTTGTGGCCTCCAAATAAAACTGATATAGCCAAAGCTGTCAGATTGCAAGATTGTCCTGGAGACGAATGGAAAGCCCATAAGGCCAGAATTATCTTCACTTCACATGACTACAATGAAGCAAGACGAAAATTACCCCAAGCTGTTGAACAGACTGATGTTGGAAGTGATGAGGGGAACTCACCACGtgcttttaaaagaaaaagaatGCCTAAAAACAATCTATTGCCTGGGGAGGATGATTCAGAGACGGAAAGCATtgtgaaagaaaaaaagtcaaaaaaaggAAAATATTCATTGCCCAATGCTCCAAAAATCATCAAGCAGCACAAAACTTTAGCAGTAAACCCAGTAAAGGAAAACAGTCCAGGGTTCAACCCAACAGGCCGCATCACTGCTGTTTGTCACTATGAAGACATGGAAGGCAGCCTGGAAGGAACAAAGTCACAAAACAGAAACTTTTCATTGCCCAATGCTAGGAGTATTGCTAGACAGGACAACACTAATGAGTTAGAACCAGGAAAGCAAAGCAGCCCCAAGCTCCAAGTACTCAATCAAACCACTCCTTCCCACCACCTCAAGGGCCACATCGCTTCTTACGACTATGAAAGAGGCCACAGCAGTCCTGAGCTTTTTCCAAGTGATGATAGTACTCCTGAGCTTTACTTAAAAGGGCACAGCACTCCTAAACTTTACTCAAGAGGCTGCAGCAGTCCTAATCTCTACTCCGGAGGCCATAGCAGTGATCACTTTTACCCAAGAGGACATAACAGCCAAAAGCTCCACA
>TCONS_00025461
TTCTTACTCTCACAGATGACTACAATGAAGCAAGACGAAAATTACCCCAAGCTGTTGAACAGACTGATGTTGGAAGTGATGAGGGGAACTCACCACGtgcttttaaaagaaaaagaatgtaaggggacaaatatgttttagtgtttcgttttattttcttttattaacacATATTTTAATGGGTGATAAACAACATTTACTGATAGTTTCATACTATGAAATTACTGAATGTACTTAGGCCTAAAAACAATCTATTGCCTGGGGAGGATGATTCAGAGACGGAAAGCATtgtgaaagaaaaaaagtcaaaaaaaggGTAAGAACCTTTCGCTAATTGtaactagtttattttattgcactAGATGAAATGCTAAGATCTTTTGTATCTTTGAGTAGAAAATATTCATTGCCCAATGCTCCAAAAATCATCAAGCAGCACAAAACTTTAGCAGTAAACCCAGTAAAGGAAAACAGTCCAGGGTTCAACCCAACAGGCCGCATCACTGCTGTTTGTCACTATGAAGACATGGAAGGCAGCCTGGAAGGAACAAAGTCACAAAACAGAAACTTTTCATTGCCCAATGCTAGGAGTATTGCTAGACAGGACAACACTAATGAGTTAGAACCAGGAAAGCAAAGCAGCCCCAAGCTCCAAGTACTCAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-347 No description available

Ensembl:

ensembl_id ENSDARG00000069189

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025460 False 892 mRNA 0.43 6 19120984 19124312
TCONS_00025461 True 663 processed_transcript 0.37 2 19123332 19124079

Neighbor

gene id symbol gene type direction distance location
XLOC_012753 si:dkey-242h9.5 coding upstream 17020 19101679 ~ 19103964 (+)
XLOC_012751 slc24a1 coding upstream 81024 19006063 ~ 19039960 (+)
XLOC_012752 BX548060.1 coding upstream 87771 19025989 ~ 19033213 (+)
XLOC_012750 hacd3 coding upstream 125701 18982077 ~ 18995283 (+)
XLOC_012749 NA coding upstream 151218 18968890 ~ 18969766 (+)
XLOC_012755 rab11a coding downstream 7461 19131773 ~ 19139152 (+)
XLOC_012756 NA coding downstream 288785 19413097 ~ 19416040 (+)
XLOC_012757 map2k1 coding downstream 294808 19419120 ~ 19451165 (+)
XLOC_012758 zwilch coding downstream 332336 19456648 ~ 19472646 (+)
XLOC_012759 NA coding downstream 400529 19524841 ~ 19620953 (+)
XLOC_012748 BX571681.4 non-coding upstream 209369 18910366 ~ 18911615 (+)
XLOC_012745 NA non-coding upstream 292499 18827219 ~ 18828485 (+)
XLOC_012744 NA non-coding upstream 320932 18798840 ~ 18800052 (+)
XLOC_012769 BX890624.2 non-coding downstream 965069 20089381 ~ 20208129 (+)
XLOC_012771 NA non-coding downstream 1192131 20316443 ~ 20325221 (+)
XLOC_012772 NA non-coding downstream 1203807 20328119 ~ 20376935 (+)

Expression


Co-expression Network