CI01000306_09851578_09857742 (HP1BP3)


Basic Information

Item Value
gene id CI01000306_09851578_09857742
gene name HP1BP3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9851227 ~ 9858552 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_09851578_09857742.mRNA
CTATAAATGGAGCAAATAAACAATGAGATTGTTGCTCCTTTCTTGTTAATTTGCTGTGCCTTTATGTCCAGCGCGTTTGTCGGGGTGCTTTTCTTTGCACGAGCTTCCCTGTGGTAAACAGAGGTCATGGACGTACATCTCAGGTGTCCAAAACAGTGCACACAATTCCTGTAATTTTGTAAATAAATCCTTGTCCACAATGTAATGCATTACAACTTATTAAACAATGTAACATGTTTTTATTCTATTCCCAGTTCAGATGCATTTACTACACACACACACACACATATATATATATATATATATATATATATATATTAATAAAGTGTTTATTTATTGGCAGGTAAAATCATGCCCATTCGCCGATCAGCTGCAGCCCCACCCAAAGAGGATGCAACCCCTGCAAATGCCCCTGAGGGAGATGCTCCTGCTGAAGGGTCTGCTCCTGTAGGTGAGAAGGAGAAGGAGAAAGATTCGTCCACTGAACCTGCAACCACGGAGGACAAGAAAGCAGGAGGTGATGGGGAGGAGGCGAACGCTGATGGGGAGGCACAGGCTAAAGATGACGGAGAGACGCCTGATGGAGAGAAAACTGAAGAAGCAGCAGCTGAACAAGGGAAGAGCAAGAAGAAAAAAGTCAAGGATGTTGTAGCCAAAATTGACAAGGAAGGAGATGACAAAGGGAAAAAGGTGAAAAAGAAGATTCCTGCTTGGGCGACCATTTCTGCCAACAAACTGGCTTCAGCCTCTCTTTCCCAGCCCAAAGTTGAAGAAATCCTCATAGAAGCAATTGAGAGTTGCAAAGAGCGGAGTGGCGCCTCTTCTATTACTATTATGAAATACGTCATGAAGAAGTATCCGTCTGTGGAAATGGACAAAAAGACCAAAAACCTCTACAAGCGGGCCCTGAAGCGATTGGTTGAGAAGGGCACTGTCAAACAGCTCAAGGGCAAAGGCTTTTCTGGAAGTTTCGCCATTGGGAAGAAGTCGGCTTCATCTACAGGGACGAAGGAGACGCTGGGAGAGTCTCTGCCTCTGATCATCACCCGCCTCTGTGAACCCAAGGAGGCTTCCTACATCCTAATCAAGAAGTACCTGGAGCAATACTTCCCACAACTCAATGTGGAGAACAGGCCTGACGTGTTGAAGAACTGCCTGCAGAGATCTGTGGAAAAGGGCTACTTGGAGCAGATCACTGGCAAGGGAGCCTCTGGAACATTCCAGTTAAAGAAAGCTGGAAACAAGGTGCTCATGAGTGGCGGACTGCTGGAAGATGCTATAGTTGCCGCCATCACAGCCATGAATGAGCCCAAGACCTGCAGCATCACCATACTGCGCAAATTCTTGATGGAGAAACAAGACCAGAAGAATGTCAGGATAGTTGTGCCAAACCTGAAGAGAACTTTGCAGAAGTGTAAAATGATGGGATGGATGGAGCAGATTTCTGGTCATGGACTCAGTGGGTCGTACCAGCTAAGCTATCCATATTACCCAAGCCCAGCGGTTCTGTTTCCAGAAATGATGGAAAAACTCAAACAGAAGGAGGGACAGAAGCTCAAACGCAAGAGAAGTGATGATTCTGATGAAGAATCTGAAGCAGATTCAGAGGAAGAATCTGAAGAGGAAGAATCGGAAGAGGATGAGCCTCCTCGAAGAAAGAGGAATCAGCGTGGAAACCGGCAACCTGCGTCTAAAGCTCGTCAAAATAAAAGGGCTAAAACAGTCAGCCGAAAACCTCCTGCTTCAAAGAGATCAGTTGCGCCTGCCAAGAAAGCCCCTCCACCAGCCAAGAAACCCGCCGCTGCGAGCAAAGCAGCATCTAAAAAGGCACCTGCGCCCGTTAAAGCCACACCAGTCAAGAAAGCCGCACCAACCAGCAAACCTAAAACACCGATAGCCAAAAAGATGACAAGCAGGGGGTCCAAACGGCCGTCGCCCAAGGCAGCTAAGAAGGAGGCAACTGAATCTGCTGTGAAGGCTAAACCTGCCGCCCGCAAGTCGCTCCGATCCCGGAAATGAGTCCCACGCTTGCCGACAGCTAAAAAAAGATCAACTGTAGCTCTGTAGACTGCAGTGATGGCTATTTTCTCCTCTTATTTTTGTAGAAACTTCCATGTTCTCCTTGTCTTGGGGCCTCTGATGAATTTAGGACCTCTTCAAAGTTATTCTGTCATTCAAATACAGGCATTTTATGTTACAGGTAAAGATGTAGAGTAGAAATGCTACTGTTTATGTTGTTTAAAACGCTAATTCAGGTCATTCTCATTATGAGAGTGTGAAGGAGCTGTTGCTTCATCTCAGTTGTGCTTCAACAAAAAAATCAAATATTTAAAGTTCTTGTAGTCAATCTTTCTGTAGAGATGCTTGCGCATTTCAGTTATTCAGTCGCCCCTTTTTCATCAGTGTTCAAGAAACCTCTCTTTGTAAGTTTTGTTTCAATTTTTTTGTTCATGTTTTGTGAAGTTAGATCTTTAGCTACTATTGTAATCAAAAAATAATTTTGTTGATGTTGGTTCCTTCGTGTAAGTCAAAGTAAAGAACGATTATTGATGCCTAACTTTCAGTTGAACAATGCAAAATTGGATTTACTGAGATGCATTAAAAGAACGTTGGCATCCATATCCATGACTGTCTTTTTGTTCTGTATAGTCTATGAAGGAGAATATAAATTGAAAAGATTTTCCAAGCAGATGTTTAAAGCATTATACACACTATTAACCCGGTCATACTCTTGAGTGTTAGTTTATCAGGGGGGTTAGATGTAATTTTATGAGCATTGCTTACCTTACCCTGCATGCATGTAACTGATATACTTTTCTGTAGTCATTA

Function

symbol description
hp1bp3 Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be involved in heterochromatin organization. Predicted to act upstream of or within nucleosome assembly and regulation of transcription, DNA-templated. Predicted to be part of nucleosome. Predicted to be active in chromosome and nucleus. Orthologous to human HP1BP3 (heterochromatin protein 1 binding protein 3).

GO:

id name namespace
GO:0000786 nucleosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_09851578_09857742.mRNA True 2829 mRNA 0.44 11 9851227 9858552

Neighbor

gene id symbol gene type direction distance location
CI01000306_09674684_09680504 CRELD1 coding upstream 170554 9672775 ~ 9680673 (+)
CI01000306_09656951_09671072 NA coding upstream 179461 9655395 ~ 9671766 (+)
CI01000306_09625036_09626067 NA coding upstream 224286 9624960 ~ 9626941 (+)
CI01000306_09559074_09602026 NA coding upstream 248981 9558978 ~ 9602246 (+)
CI01000306_09548430_09553502 WNK2 coding upstream 297725 9548430 ~ 9553502 (+)
CI01000306_09860935_09865155 SH2D5 coding downstream 2383 9860480 ~ 9865724 (+)
CI01000306_09866302_09875270 KIF17 coding downstream 7750 9866302 ~ 9875717 (+)
CI01000306_09891658_09893015 SNRPE coding downstream 33106 9891532 ~ 9893239 (+)
CI01000306_09922070_09935786 SOX13 coding downstream 63518 9922070 ~ 9936407 (+)
CI01000306_09971328_09977478 NA coding downstream 112776 9971328 ~ 9977752 (+)
G435609 NA non-coding upstream 102398 9745834 ~ 9748829 (+)
G435590 NA non-coding upstream 133613 9704707 ~ 9737144 (+)
G435589 NA non-coding upstream 152902 9697429 ~ 9698325 (+)
G435540 NA non-coding upstream 247831 9602427 ~ 9603396 (+)
G435554 NA non-coding upstream 371134 9436545 ~ 9480093 (+)
G435637 NA non-coding downstream 19088 9877640 ~ 9877881 (+)
G435639 NA non-coding downstream 20112 9878664 ~ 9884919 (+)
G435660 NA non-coding downstream 38442 9896994 ~ 9897394 (+)
G435661 NA non-coding downstream 39308 9897860 ~ 9898223 (+)
CI01000306_09263755_09288503 NA other upstream 565898 9263589 ~ 9289035 (+)
CI01000306_09225597_09230504 NA other upstream 624721 9225512 ~ 9231333 (+)
G434545 NA other upstream 2731368 7119317 ~ 7119859 (+)
G433724 NA other upstream 3721449 6108611 ~ 6129778 (+)
G436932 NA other downstream 1224436 11082988 ~ 11098376 (+)
G437030 NA other downstream 1411206 11269758 ~ 11271160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002139 NA coding CM030136.1 CM030136.1 4594152 ~ 4600114 (-)