CI01000306_09263755_09288503


Basic Information

Item Value
gene id CI01000306_09263755_09288503
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9263589 ~ 9289035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_09263755_09288503.mRNA
TTATAAAAAAAATGTTGCCTGTGGCCCAGATCTGCTGTACATGTGGTCACATGATGTAGGTCTTCATAGAACTGACTGCTATTAAATGTTTTCTGTGGTCTAATGTGTTACTTCCTAATTCATCCATTGTTTGAGTTTCATTCTCTCTTTTCTCATACTCGCTGTAATGGAGTTGTTCATCTTCATTGCTTTTCAGCTTCTTATAGAGGTTCAGTCTCACATCAGTGCTAATTTCACCTGTAGTCTCTACACTGAGGATGATCTTCTGCACTCTCAGAAGAGACAGTCTGGAGAACGTCTTTGTATGTTTTATGTAACTCCTGGTGAACTCTTCACACGATCAGAGAACAGACAGCTGAGCTGTGATTATTCACTCAACACTGAACCTGAGATCAGATCACCGCGCAGTGAAACATACACCATCAGAGGTTCAACAACAACCACCACAGCACGTACTATTACAACAGCCACTACAAGTAAAACATGGTTTATAGTTCTGGTTTCCACTGGTGTTGGTGTCATTTTGACTGGATTCATCTGTCTGTGTCGGTTTGCAAAGTTCTGGACCTGCAGAGACATATTCTGTGATCACTTCTGTACCAGCCACATCTCAGCCCATATCTGTGGCTCGAATCAGCTAAAATATTGGCTTACTGAGCACAGGATTGATAAACCATCATGTCATTCTCCTGATGGCACAGTGACGGTTCTAGATGAGATATTTCACTGCTGTTCTTCAACTACCACTTTGAAGTCACATGTTCAAAAAACATCTCCTCACTCTGATCCAGTGACAGTAACAGTCCAGAATTCAGTGGCGACCTCTACTGGTGAAACTCTGACAACAGCCACAGAAACTGATATTCTGAATATCTTCAGAGCTGATTTCACCTGTAGTCTCTACACTGAGGATGATCTTCTGCACTCTCAGAAGAGACAGTCTGGAGAACGTCTTTGTATGTTTTATGTAACTCCTGGTGAACTCTTGACACGAATAGTGAACAGACAGCTGAGCTGTGATTATTCACTCAACACTGAACCTGAGATCAAATCACCGCGCAGTGAAACATACACCATCAGAGATCTTACTCAGGCCAAGTTAACAGCGTCTGCTTCAGTTATTAAGGAAACAGACACAGTTCAGCTGAGCTGTGAGAGTACTGAAGATCTGAAGATAGAGATGTGTTACTTTAACATAAATGGAAGAGACAGTAACTCAAAACTGAACTCATCATGTCAGCTCTCACTCAATGGATCTGAAATCAGAATTTGGTCAGGAGCACCAGATGCACATCATGTTACGACAGCCAAGAAAACCTCTTTACCTTTATTGTCCACTTCTGAAACATACAGTTCAGCTGTTTCAACACCAGCTACCAATGCACATGTGACAACAGCCATGACAACCTCAATAATGGCTGCTGTTTCCACTACTAAAACCCCAGAATCCACCAGAACTGACTCATTTTCCAAATCAAACCTGCCAACCAGCACAACAAAGGAAACCACATCAATAATGGCTGCTGTTTCCACTACTAAAACCCCAGAATCCACCAGAACTGACACATGGTTTATAGCTCTGGTTTCAACTGCTGCTGGTGTCATTTTGACTGGACTCATCTGTCTGTGCTGCTTTGCATGTAAAAAAAGAAGACGAAAAAACAATAAAATGAGATCAATAAGATCAGATGTGCCCAGTCAAGAAATTGGTATGAGTTCTGGACCTGCAGAGACATATTCTCTGATCACTTCTGTACCGGCCACATCTCAGCCCATATCTGTGGATGTTTTGGTCAATAAACAACAGAAAGAGAAAAATACAAAGGAAAATGAGAATGTTTACCACCTGTACTGCACGATCCCTGACAAACCAGTTCATTCAAACACAGCAGATCAAGTCTACAGTTTGGTGAAGATGCACTGATGAGTCTCTGTTGTTTCATTATGTACAGTATATCCATTATAAAGTTTCTTTACTTGAAGCAAAATAGGTGTTTACTTTCATTATTCAGTGCTTGGTGTGGAACCACTTATAATACTGGATTTAAAATATCACATTTAATATTAATACTATTTATTTTTAACCATCCCTGGCTTTGTCTGAAATTATCCGTTTTAATAGAAAATGTACGGCTTGTCAGTAAATTGCCACCATTATGTTTAGCTAACGTCATTCCATAGGAAAAAGTAGGCTTTGCTTTGAAAACATTATCCATATAAAACCGTATTATACAGATGAAATTGTTTACTTACGGTTTGGCATGTGGCTTCTGTCAGATCCAATCCAGCTATATCAGTCTTCTTTTTACAGTCTATGGATCCAATACAGTTGGCTGCTTCATCTTTCAACAAAAGTTTCTTTGCAAACTCTCCATTATACTGTGCCTTCGTTTAAAAAAACACAGTAAAATGTTCTGAACAAACATATAATTCTCCGATGTGAACCGGGAACTTTA

Function

NR:

description
hypothetical protein cypCar_00049007, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_09263755_09288503.mRNA False 2456 mRNA 0.40 21 9263589 9289035

Neighbor

gene id symbol gene type direction distance location
CI01000306_09248061_09260369 NA coding upstream 3181 9247797 ~ 9260408 (+)
CI01000306_09225597_09230504 NA coding upstream 32256 9225512 ~ 9231333 (+)
CI01000306_09216004_09219290 NA coding upstream 44026 9215829 ~ 9219563 (+)
CI01000306_09195793_09213433 NA coding upstream 48724 9194217 ~ 9214865 (+)
CI01000306_09155525_09189777 NA coding upstream 73427 9155350 ~ 9190162 (+)
CI01000306_09296908_09305617 NA coding downstream 7774 9296809 ~ 9306977 (+)
CI01000306_09361874_09367807 PARAPINOPSINB coding downstream 72839 9361874 ~ 9367838 (+)
CI01000306_09475675_09494799 TKTA coding downstream 186496 9475531 ~ 9495855 (+)
CI01000306_09500798_09514840 BICD2 coding downstream 211440 9500475 ~ 9515321 (+)
CI01000306_09518431_09519858 CARD19 coding downstream 228927 9517962 ~ 9520720 (+)
G435451 NA non-coding upstream 33985 9176768 ~ 9177266 (+)
G435447 NA non-coding upstream 34997 9149920 ~ 9150238 (+)
G435446 NA non-coding upstream 144077 9119175 ~ 9119512 (+)
G435554 NA non-coding downstream 147510 9436545 ~ 9480093 (+)
G435540 NA non-coding downstream 313392 9602427 ~ 9603396 (+)
G435589 NA non-coding downstream 408394 9697429 ~ 9698325 (+)
G435590 NA non-coding downstream 415672 9704707 ~ 9737144 (+)
G434545 NA other upstream 2143730 7119317 ~ 7119859 (+)
G433724 NA other upstream 3133811 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 3155414 6106143 ~ 6108175 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 3277301 5975822 ~ 5986288 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 571178 9860480 ~ 9865724 (+)
G435639 NA other downstream 590885 9878664 ~ 9884919 (+)
CI01000306_09891658_09893015 SNRPE other downstream 602497 9891532 ~ 9893239 (+)
G436932 NA other downstream 1793953 11082988 ~ 11098376 (+)
CI01000306_09263755_09288503 NA other upstream 500 9263589 ~ 9289035 (+)

Expression


Co-expression Network