CI01000306_09500798_09514840 (BICD2)


Basic Information

Item Value
gene id CI01000306_09500798_09514840
gene name BICD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9500475 ~ 9515321 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_09500798_09514840.mRNA
TCATAAATGGGTGAATGGAACTACATTACCCATAAAACAGGGGTGACAAAATCACTTCGTATTCCTTCTGGATGATCTCACAGCAGACTGAGTTCCCCTCCTAATCTCAGGAATGACATCAGAACAAGAGGAAATCATGGAGTTATACATTGAAACATGGGGAATAAGTTTATAAGATTGAATTTTAAACTTTACTTGAAGAATAGTGCATCTAATAAACTGCATGCACCTCAGATTGGGGATCAACTTCATGGTTGAGAAGGAGGAATTAACGGGCTCGGTCCGTTATCGCCTCTATTAGACTGTGCCGGGTGAGGGCAAACATGTCCGGGGATGAGGACGGGTGTCCCGAGGCGCAGCTTGTCACGGAGGCCGGGCCCAACTGGCTCCGCGCGGAGATCGAGCGCCTGACGCGGGAACTGAGCGAGACGAGCCGGGAGAAGATCCAGGCGGCGGAGTACGGGCTCGCGGTGCTGGAGGAAAACCAGCAGCTGAAACAACGCTTTGAAGATCTGGAGAGCGAATATGAGACCGTCAGACAAGAGCTGGATCAGCTCAGAGAGGCATATGGCCAGGTTCACTCCACCCATAAAAAGGTGGCTGCGGACGGGGAAAGCAGGGAGGAGTCCCTCATCCTGGAGTCGGCATCTAAAGAGGCCTACTATGAGCAGAGAGTGCAGGATCTGCAGACTGACCTACGACAAACAAAAAACACTCTCACCAGCACACAGGCAGAGAACGAACGTCTGGCCACCCTTGCCCTCGAGCTGAGAGAGAATAATGAGATTGTGGAGCTGCAGCGCAGTCGTCTGCGTGATGACATTCGAGAGTACAAGATCCGAGAGTCTCGTCTGCTGCAAGACTACACTGAACTGGAGGAGGAGAACATCAGCCTGCAGAAACAAGTCTCCACCCTTAAACAGGGTCAGGTGGAGTTTGAGGGACTCAAGCATGAGAATCGGCGTTTGGAAGAGGAAGTACAGTACCTAAACAGCCAGCTAGAGGACGCTGTTCGGTTACGCGAAATAGCCGAGCGTCAGCTAACGGAGGCTCTAGAAACCGTAAAGACCGAGCGGGAGCAGAAAGCAGCTCTTCGAAAAGAATTGACACATCACATGACCCTGGGAGACTCCCTCCTTGCCAGCTCATTGGACGGGCTTAAACTGAGTGCAGACGAACCTAATAATGATGATGCCATTCTGACATTTGAAAATGGATTTGCTAAAGTCAGTGAAGGTAATGATGAAGATAACAGATTGTCTTCACCCAAGAGAGGTGAAAACTTCCGTCCCGCACCAAGTCTGGTGGATGACTTGTTGACCGAGCTGAACATCTCTGAGATCCAGAAACTCAAGCAACAGCTGTTACAGGTGGAGCGAGAGAAGGTAGCTCTTCTCACCACTTTACAGGACTCTCAGAAGCAGTTAGAGCATGCTCGCGGAGCATTAGCCGAACAGCAGGAAGCTATGACGAGACTTAGCGATGATTTGGGCGCAATGAGAAGACTGCAGGCAGGCAAGGAGCGGCAGTCGGCACTAGACAGTGAGCGAGAGCGGGACAGTCGAGAGGACAATGATGTGGACTATTATGAGCTGGATATCAATGGGCCAGAGATACTTCGCTGCAAGTATGAGGTAGCCATAGCAGAGGCAGGTGAACTAAGGGGGGAGCTTAAGGGACTAAAGTCGGAGCATGATGAGATGAAGGCTGAGCATGAGGAGATACGGGCACGACTGGAAGGACAGGTGCGTGACCTCAGTGTTCAAGTGTCTCAGTTGGAGAGCAGCAGCCGTGCAGACCGCGATCAAGTCACTCGGTTGGAAAAGGAGCTAAAGGAAGTGAGTGCAGTCGCAGGCGAGACAGAGGGCAGTCTCAGCGTTGCCCAGGATGAACTTGTTGCCTTTAGTGAAGAGCTTGCAAACCTCTACCACCATGTCTGCATGTGCAACAATGAAACCCCGAATCGCGTCATGCTTGATTTCTACAAAGAAGGTAAAGGAAGCAAGACTGAAGGTAAAGATCGGCAGTCTACATTGACGCAAACCAGCAACAGCACAGCCCAGGCACCCAGGTCCAACTCCACTACTGTTGACAGCTCAACTTCTGGGATGGCAGTCAGAGAAGAGCCACGTCCTGAACCAATGGACATCTACAACCTGGTAGCAATAATTCGGGATCAGATCCGCCACTTGCAGAAGGCAGTGGACCGTACCACAGAATTATCCAGGCAAAGAGTTGCTTCTCTAGAGTTGGCCGCAGTGGCAGATAAAGACCAAGCTGCTTGCATGGAGGAGATTTTGAAGCTCAAGTCCCTGCTGAGCACTAAGCGAGAACAGATTGCCACGCTGAGGACTGTGCTCAAGGCCAACAAACAGACAGCTGAGGTTGCCCTGGCAAACTTGAAGAGCAAATATGAGAATGAAAAGGCCATGGTCACCGAAACCATGATGAAGTTAAGAAACGAGCTGAAGGCTCTTAAAGAAGATGCTGCCACTTTCTCCTCTCTCAGGGCAATGTTCGCCACCAGGTGTGATGAGTATGTAACACAATTAGACGACATGCAGAGGCAGCTAGCTGCAGCAGAAGATGAGAAGAAGACTCTGAACTCCCTCCTGCGTATGGCCATCCAGCAGAAACTGGCCCTCACTCAGCGACTGGAGGATCTGGAGTTTGACCACGAGCAATCCCGAAGAGGATCCGGTGCTGGGCCAGGTGGCCGTGGGAAGGCTCCATCTGGGCGTGGCAGAGGACCCTTGTCTTTTTCCAGCCCCCATATCTACATGGAGAGAATAGATGTGTTGCTGCTAATGCCATTCTACCTACTAGGTTTATCACGATCACTACAAGGCTTGCTAGTTCACTAAAAAAAATATTGTTCTTGGAGTTTTCCAAAAATCTAATAGGTGAACTCCAATATTTGGGTACTGCAACTTTTAGTATCGATGAGTGCCGGTATTTTTAACATCCATACTATCTACTATTTTTTTAATAGAAAGCAGTCTGTAGTGTATGCAAATGTCTAGTATGCATTGATTACCTACTACATATATGACCAGAGCAAACTATAATGTACAATGCAATGCATTAGTTCCATTTCCAGTGTCTTTGTACTTAAGCAGATACTGTATATTGTGTTGGAACTAAACTACATGAACGTCAATATCTAAGACAATGTCTAGCCATGTTAAAATACCGTACATCTACGTCCGTATCTAAATTTGTCTTTTCTGTCTGAACGTTTGACCCCAATGTTTCTACTTGAACACAGCCAGCACTGAGAATACTGAATGTCATTGAGTTAAACCCAGTTTCACAAAGCTAGTCTGTTAATCTGTGTCAGTGGGA

Function

symbol description
bicd2 Predicted to enable dynactin binding activity and dynein complex binding activity. Predicted to be involved in microtubule anchoring at microtubule organizing center; protein localization to organelle; and regulation of microtubule cytoskeleton organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and cytosol. Human ortholog(s) of this gene implicated in spinal muscular atrophy with lower extremity predominance 2A and spinal muscular atrophy with lower extremity predominante 2B. Orthologous to human BICD2 (BICD cargo adaptor 2).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K18739 BICD; protein bicaudal D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_09500798_09514840.mRNA True 3345 mRNA 0.49 9 9500475 9515321

Neighbor

gene id symbol gene type direction distance location
CI01000306_09475675_09494799 TKTA coding upstream 4620 9475531 ~ 9495855 (+)
CI01000306_09361874_09367807 PARAPINOPSINB coding upstream 132637 9361874 ~ 9367838 (+)
CI01000306_09296908_09305617 NA coding upstream 193498 9296809 ~ 9306977 (+)
CI01000306_09263755_09288503 NA coding upstream 211440 9263589 ~ 9289035 (+)
CI01000306_09248061_09260369 NA coding upstream 240067 9247797 ~ 9260408 (+)
CI01000306_09518431_09519858 CARD19 coding downstream 2641 9517962 ~ 9520720 (+)
CI01000306_09536090_09548281 NA coding downstream 18594 9533915 ~ 9548281 (+)
CI01000306_09548430_09553502 WNK2 coding downstream 33109 9548430 ~ 9553502 (+)
CI01000306_09559074_09602026 NA coding downstream 43657 9558978 ~ 9602246 (+)
CI01000306_09625036_09626067 NA coding downstream 109639 9624960 ~ 9626941 (+)
G435554 NA non-coding upstream 20382 9436545 ~ 9480093 (+)
CI01000306_09216004_09219290 NA non-coding upstream 244785 9215829 ~ 9219563 (+)
G435540 NA non-coding downstream 87106 9602427 ~ 9603396 (+)
G435589 NA non-coding downstream 182108 9697429 ~ 9698325 (+)
G435590 NA non-coding downstream 189386 9704707 ~ 9737144 (+)
G435609 NA non-coding downstream 230513 9745834 ~ 9748829 (+)
CI01000306_09860935_09865155 SH2D5 non-coding downstream 348825 9860480 ~ 9865724 (+)
CI01000306_09225597_09230504 NA other upstream 273969 9225512 ~ 9231333 (+)
G434545 NA other upstream 2380616 7119317 ~ 7119859 (+)
G433724 NA other upstream 3370697 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 3392300 6106143 ~ 6108175 (+)
G435639 NA other downstream 364599 9878664 ~ 9884919 (+)
CI01000306_09891658_09893015 SNRPE other downstream 376211 9891532 ~ 9893239 (+)
G436932 NA other downstream 1567667 11082988 ~ 11098376 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location