G435609


Basic Information

Item Value
gene id G435609
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9745834 ~ 9748829 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500034
TCAATTTTAGTTTTTTGTCTTTATTCTTCTCCAGTCTGGAAACAAATTGCAGGTTCATTATTTTCATAATCACATTACATGACATGATGCACCAAAATTTATCTTTTAACAGGAATACATTGAAAAGAACACAATATTTCACAATGAATACTGGACTCACATTTAGCCCATTGCACTTACAACAGTGAGTGAATCTTCATTCGTGAGAGAATTTTTATGAAGTCTCGTCTCTTTTTTTTCTGTGTTGTTTTACCCAATTCCCTATTGAATTTATAATACATCTGCTTATTCACTCTGAACCCTCTTTTCTGGCACAGTCATGATGGAAGCCACTAACATATTTTTCCATTGTATTTAGATTTAACAAACACAATAGCCCCCCCCCCCCACTGTAGTCAACAGTCATTGAGAGCCAGCAACATATATACTATGATATTTTTTTTTCTCATAATAATAACAATAATCATTATTCTTTTATACACAAAAGCACAAAAGGTTGGCAGCAAGGCCGGCGTGAAGTTGCACAAGACGGCCATCATTTTACTCATGATATTTAAACACTGTACAAAATAACCAAAGTCAGTATTTACAGCGACAGTTAGTCTATATATGTGTATGTGTGTGTTTACATGCCTGTTTGTGTAGATATGTCTGTGTTTGCGTATTTCTATCTATCACTGTGGCCGGCTTTTGTGGTGGCAACTTTGGCTCATGCACTTGTTATTGATTATCTCCATGGTAACAGTGATGTAGAAGAGTTATTATTCTTCATCATAGAGTCGTGATTGCCTAAACAGCATTCCAGTATCAAAAAGGAAAAGATTCGCCTCTAATCAACGCACCTCATGACTTATTCAAACGAGTGAGGTCCTACCGAACTCAAATTATGTTTGTGCTTTCAACGTGCATGCCCTGATTTTCATATGAATGGCATGGAGGTGAATTCATGCTACATACTGTACAATGATCACGTTTACAGCAAGTCGACTTTGAATCTTCTCCAAAGCATAGTTTTGACTGTGACATCGTCAATTTTACATGTTCATGTGCCTTTAAGAACACGTCATTTTCTACTGTCGTAATAATGGCATTTATTTTCCATCTCTCGGTTTTCTCAATGGAGAAACATTGCGTTAACTAGATATACATAGCACAAAGACCTGTTTGTGTTAATTCAGTGTGAACACGACAACATTCGCAACCAAACACAGATGTAAAACGCCGTTTCCCTGTTGAAGGAGACGAAATAACGAGTGCATAAGCTGTGTGCCCGACTTGTCGCCTGATCAAACTGCAGACACGAAGAGCGAATGACAGCATTACAAAGAGCCAAAGAGAGCTGAGCAGAATCATGCTGCAAGCAACAGAGATGGTGGATGTCCAAGACCAACAGTCCACACAGTTAACCCTTTGGCAACAGATTCCCTGAAAACTAGGGAAGACGAGGGCTTTCATAAACATGCCACTAAAATAATAAGAAAGAAATCTAGTAGTTCGATATTTTCATACATACAAGGTAAATACAAACATGTCCCTAGTCATATTTGAACATATCGTAACGCAGTATCGGTGAGGGATGTCGCAGTGGGAAAGGTTTAACATGGATTATTGCATAGAACATTTGAAATTAGTTCAAACCCTTTTCCTAGGTGGATCTATGTAGCGGTAAATGTGTTTTTTTGGAACATCTGGATGCAGGAGAGGGTGATGGTGTAGTTGGGGTTTGTAGAAACTTATTTTACTTGTCTATGTACGACAATCACATCTGTGACGAGGAACTTGAATGCAAAATTATTGTGCTCTGTACGGATTAGCATGCTATTGCTTTGGGGGGAAAACAACTATTTATAAAAACAGTTTATATTATCAATAATGATGAGGGAAAAATATGTAAAGATATAAATAAAAATAATAATAATACCAAACATTAAACAAAGAAATACCCGAAATATAAATCCATAAATACACAAATCAATATCTTACATTAGCAGTGTGTTAACAAGAGATATGTACATGTTCAGCAGTATACAGATGTGCAAAATAAATCAAGTAAGGATGATATGGAACTTTTAAAAAATATGTGAGGTATACGAGTAAAAAATATTAGTAAGGCTCTTAATTTAAAATAAATTTAGGCAAAACTGATAAGAAGCTAACACAAAAAAAAAAAACATACGGAAACTTAGGGCATTCTGGGATAGGGTAGCGATGGCTTAATGGTTGATAAAAGAGGGACATGACTATGCTAACATTCTGATATTACTGACCTCTGCACTTGACCGATAGTTTTACGTTAAATAACCAGCTTTTTACACAAGGTGCACATGGCTTCACCCTTAGAGACTCTGAAAAGTTGTCTAGATATGGATTCATATATATATCTCATATATGTATACATATATATTTTTTTGTGCGTGCATTCCATGTCCACGGTTTACACATTTGCATTCATTACACACGTGACAAAAAGGTTAAGGAAGAAACAAAAACATTCATAGAGAGGGTCAATCATCGCCATATTGGAATGTCAAGATCTTAGAAATCGAGCATACATTTTTTTTTAAACAGTTTGTTTGAATCCTTTGTAAGGTAGTCGTTCTCCTTCACTGCTACGGTCTCTTTGAGTCTGGGCAGAGAAGTCTTCATTAGGACTGCAAAAAGCTAAGAACTGCAGCTGCCTGACATCTTAATGCTGTTTTTTTGGAATAGGGAGGGTCACCTGAGCACAGATTATGTCATATAAGGGAAGACATAATTGTCTGAAAAAACCTCAAACAGAACAGGCAGTTTGGCATTTTGGGAACTGTAATTGCTTCGACAGCAACTATGGAAACGCTTTGGAAGAAAGATTCAGCCTCCGTTTTGGTTGGCTATGTAGATATCATTGGATAGACCGTGCCTGTGAATTTCATCCTAATGTTTTCATTGAAACTTCAAGGTTGGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500034 True 2947 lncRNA 0.37 2 9745834 9748829

Neighbor

gene id symbol gene type direction distance location
CI01000306_09674684_09680504 CRELD1 coding upstream 65161 9672775 ~ 9680673 (+)
CI01000306_09656951_09671072 NA coding upstream 74068 9655395 ~ 9671766 (+)
CI01000306_09625036_09626067 NA coding upstream 118893 9624960 ~ 9626941 (+)
CI01000306_09559074_09602026 NA coding upstream 143588 9558978 ~ 9602246 (+)
CI01000306_09548430_09553502 WNK2 coding upstream 192332 9548430 ~ 9553502 (+)
CI01000306_09851578_09857742 HP1BP3 coding downstream 102398 9851227 ~ 9858552 (+)
CI01000306_09860935_09865155 SH2D5 coding downstream 112106 9860480 ~ 9865724 (+)
CI01000306_09866302_09875270 KIF17 coding downstream 117473 9866302 ~ 9875717 (+)
CI01000306_09891658_09893015 SNRPE coding downstream 142829 9891532 ~ 9893239 (+)
CI01000306_09922070_09935786 SOX13 coding downstream 173241 9922070 ~ 9936407 (+)
G435590 NA non-coding upstream 28220 9704707 ~ 9737144 (+)
G435589 NA non-coding upstream 47509 9697429 ~ 9698325 (+)
G435540 NA non-coding upstream 142438 9602427 ~ 9603396 (+)
G435554 NA non-coding upstream 265741 9436545 ~ 9480093 (+)
CI01000306_09296908_09305617 NA non-coding upstream 439667 9296809 ~ 9306977 (+)
G435637 NA non-coding downstream 128811 9877640 ~ 9877881 (+)
G435639 NA non-coding downstream 129835 9878664 ~ 9884919 (+)
G435660 NA non-coding downstream 148165 9896994 ~ 9897394 (+)
G435661 NA non-coding downstream 149031 9897860 ~ 9898223 (+)
CI01000306_09263755_09288503 NA other upstream 460505 9263589 ~ 9289035 (+)
CI01000306_09225597_09230504 NA other upstream 519328 9225512 ~ 9231333 (+)
G434545 NA other upstream 2625975 7119317 ~ 7119859 (+)
G433724 NA other upstream 3616056 6108611 ~ 6129778 (+)
G436932 NA other downstream 1334159 11082988 ~ 11098376 (+)
G437030 NA other downstream 1520929 11269758 ~ 11271160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) bsnb LOC106565168 misc NC_048581.1 CM023235.2 48693321 ~ 48814670 (+)
mexican tetra (Astyanax mexicanus) G191296 NA non-coding NC_035918.1 CM008321.1 19045406 ~ 19099824 (-)