Gene
RNA
| Item | Value |
|---|---|
| gene id | G435451 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 9176768 ~ 9177266 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU499854 | True | 109 | lncRNA | 0.42 | 3 | 9176768 | 9177172 |
| TU499857 | True | 77 | lncRNA | 0.38 | 1 | 9177190 | 9177266 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_09141075_09152779 | NA | coding | upstream | 5633 | 9140902 ~ 9152819 (+) |
| CI01000306_09125548_09137714 | NA | coding | upstream | 20698 | 9125051 ~ 9137754 (+) |
| CI01000306_09081250_09087963 | LDLRAD2 | coding | upstream | 70054 | 9081250 ~ 9088398 (+) |
| CI01000306_09049143_09051379 | CYB561D1 | coding | upstream | 106604 | 9049143 ~ 9051848 (+) |
| CI01000306_09034546_09046916 | ATXN7L2, ATXN7L2A | coding | upstream | 111508 | 9034439 ~ 9046944 (+) |
| CI01000306_09248061_09260369 | NA | coding | downstream | 18193 | 9247797 ~ 9260408 (+) |
| CI01000306_09263755_09288503 | NA | coding | downstream | 33985 | 9263589 ~ 9289035 (+) |
| CI01000306_09296908_09305617 | NA | coding | downstream | 67205 | 9296809 ~ 9306977 (+) |
| CI01000306_09361874_09367807 | PARAPINOPSINB | coding | downstream | 132270 | 9361874 ~ 9367838 (+) |
| CI01000306_09475675_09494799 | TKTA | coding | downstream | 245927 | 9475531 ~ 9495855 (+) |
| G435446 | NA | non-coding | upstream | 38940 | 9119175 ~ 9119512 (+) |
| G435438 | NA | non-coding | upstream | 69105 | 9089055 ~ 9089347 (+) |
| G435409 | NA | non-coding | upstream | 287575 | 8870560 ~ 8870877 (+) |
| G435408 | NA | non-coding | upstream | 288069 | 8870176 ~ 8870383 (+) |
| G435345 | NA | non-coding | upstream | 288628 | 8868477 ~ 8869824 (+) |
| G435554 | NA | non-coding | downstream | 206941 | 9436545 ~ 9480093 (+) |
| G435540 | NA | non-coding | downstream | 372823 | 9602427 ~ 9603396 (+) |
| G434545 | NA | other | upstream | 2038593 | 7119317 ~ 7119859 (+) |
| G433724 | NA | other | upstream | 3028674 | 6108611 ~ 6129778 (+) |
| CI01000306_06106248_06107449 | GM2573, CS056, WDR83OS | other | upstream | 3050277 | 6106143 ~ 6108175 (+) |
| CI01000306_05976516_05985251 | TMEM178A, TMEM178 | other | upstream | 3172164 | 5975822 ~ 5986288 (+) |
| G432958 | NA | other | upstream | 3498283 | 5658928 ~ 5660169 (+) |
| G435590 | NA | other | downstream | 483245 | 9704707 ~ 9737144 (+) |
| CI01000306_09860935_09865155 | SH2D5 | other | downstream | 630609 | 9860480 ~ 9865724 (+) |
| G435639 | NA | other | downstream | 650316 | 9878664 ~ 9884919 (+) |
| CI01000306_09891658_09893015 | SNRPE | other | downstream | 661928 | 9891532 ~ 9893239 (+) |
