CI01000308_01699956_01730072 (TNFRSF19)


Basic Information

Item Value
gene id CI01000308_01699956_01730072
gene name TNFRSF19
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1699956 ~ 1730072 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_01699956_01730072.mRNA
ACAATCCAGCCAATCGCTGCGCGGCACGTGACGTCATTGAGATGAAAGGGAATTCTGCATCAAACACTCGCAGCGGTGAAGAGAGATCAGATCACACAACCGAGCTGCTGCTGGCCGCTTTCAGTCCACGTCTGCCTCGGGATCATGCAGTTAGACTTTTTGGAGTCTGTGCATTTGCAGATTACAGGCGTCAGACCGCAGTCTTTCATCTGAGCTTTAACTTAAGTGCTGGACTCGGGACGGGTTCAGACCTCAGCGGCGAGCGCGCTGGATCGCATCCTGAACAGCTTTCCGTAGGAGATCGGAATCTCACGAGCGACGCGTTATCGTGTATGTGGGAAAGACCTTTCAGAATGCCTCAGGCACGGATCCTCTCCCGGTTTACTCTTTACAGGATACTTATTCTTCCACTGTGTGTCATGTTTGCAGTTATGGCAGAGGAGAGAAGAGATTGCAGGGAACAGGAATACAAGGATAAGTTTGGGAGCTGTATTCCCTGCCGGCAGTGTGATGCTGGACAAGAGCTATCTAAGAGCCCTTCGGGGGCCCGGAGCAGAAGGCTGTCCATTGATCCCGTGAGAGTCAGGGAGATTATTGCCTGTAGCCAGTCGCTTCAAAGAGGACCGCAGCCTGCAGAAATGCAAGCCCTGTCTGGACTGTTCCCTACTCAACCGCTTCCAGAAGGGGAACTGCTCCACCATGAACAACGCCATATGCGGAGACTGCCTGCCTGGGGTAGGGAAGGCTCTCTAGACGGTGACATCAGAGTTCCTGTGGTGCCTTCAGACTGTGGCAGCTGTTTTCTCAGGCTGATTACACATTCCCCAACCGACTTCAAACATATAGCAGTGACTGCCCATGGCCTTGATCTGCCTCTTAATAATGGGCTCGCTAGACTGGCAAGTATGGGGCGAGTAAATCTTGTCCCGTTCCAGTCTCCAGTGACCAGCCCCAGAGACATGGCTCTAGCTGCCGTCATCTGCAGTGCGCTGGCCACAGTCCTACTCGCCCTCTTCATCCTGTGTGTCATCTACTGTAAGAGACAACTGCTGGAGAAGAAACCAGTTTCATTGAGGTCACATGAAGGTCCTTACTTGGGTTCAGAGTTGTCTTGTCTGGATCGGCGAGTTCTGGAGTTTTCCCAGCGGCCTTGCTGTCACTGCCGTCACGGATCAGGACAGACCTGCGGTCCTGTACACCTGATCCCGTCTCTGTGCTGCGATGACACCTGGAGCCAAAGCCGTGGCCGTGAGAGTCGCCCCTTTCACTCTCAGAGCAGTCTCAATGAAGGACTGGTGAACCCATCACTGGGAAGCAGCCAGGCAGAAGTAGGATGTGCACCTGATGAGGCCTGGCCGCTCGTTCAGTCCAATACAACCACAGACGATCTCCAGAATGCCACACAAAGGGAAGAGGACGAGGAGCGAGACCTGCAGATCTCAGGCCTGAGCCCAGATGAGCATGAGGATGGGTCAAACAGTCGGCTTCTACTGCAACAGCTGTCTGCAATTGAAG

Function

symbol description
tnfrsf19 Predicted to enable signaling receptor activity. Acts upstream of or within establishment of endothelial blood-brain barrier; posterior lateral line neuromast deposition; and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in otic vesicle; posterior lateral line primordium; and tectal ventricle. Orthologous to human TNFRSF19 (TNF receptor superfamily member 19).

GO:

id name namespace
GO:0046330 positive regulation of JNK cascade biological_process

KEGG:

id description
K05155 TNFRSF19, TROY; tumor necrosis factor receptor superfamily member 19

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_01699956_01730072.mRNA True 1515 mRNA 0.54 11 1699956 1730072

Neighbor

gene id symbol gene type direction distance location
CI01000308_01660122_01665088 BACH1A coding downstream 34868 1658222 ~ 1665088 (-)
CI01000308_01559930_01576786 NA coding downstream 122690 1559756 ~ 1577266 (-)
CI01000308_01420955_01460290 NA coding downstream 239518 1420770 ~ 1460438 (-)
CI01000308_01300803_01359626 NA coding downstream 339859 1300619 ~ 1360097 (-)
CI01000308_01296704_01298972 NA coding downstream 400816 1296683 ~ 1299140 (-)
CI01000308_01744749_01748810 NA coding upstream 14677 1744749 ~ 1749815 (-)
CI01000308_01766688_01769436 FBXO46 coding upstream 36464 1766536 ~ 1769669 (-)
CI01000308_01810724_01812603 NA coding upstream 80223 1810295 ~ 1812817 (-)
CI01000308_01860118_01871423 NA coding upstream 129539 1857832 ~ 1872426 (-)
G438622 NA non-coding downstream 50045 1647280 ~ 1649911 (-)
G438624 NA non-coding downstream 69272 1630082 ~ 1630684 (-)
G438525 NA non-coding downstream 74200 1624540 ~ 1625756 (-)
G438620 NA non-coding downstream 75657 1623667 ~ 1624299 (-)
G438522 NA non-coding downstream 284783 1414945 ~ 1415173 (-)
G438741 NA non-coding upstream 163598 1893670 ~ 1900872 (-)
G438434 NA other downstream 746328 947556 ~ 957849 (-)
G437635 NA other downstream 1564271 135308 ~ 135685 (-)
G438671 NA other upstream 47523 1777595 ~ 1782581 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009021 tnfrsf19 coding NC_007126.7 CM002899.2 8235531 ~ 8309217 (-)