G438434


Basic Information

Item Value
gene id G438434
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 947556 ~ 957849 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU503204
CACTCATTTACATAGTAATCACCCCGTGCTCTGTGAGAGGCCAGAGAGAGAGAAAAAGAGAGAGAGAGAGAGGAGTGATTTGTGAATGAGCAAAAGAAAAGAAGAGAGTGAGCATGTGTACATCTGGACAGGTACATTAATTCAGTGTGAGAGTACACAAATTATGTGTGTGTGTGTGCAAGCGTGTGTGTGTTTGTCGAGGAGGTGGTTATAAATGTGATCGAGCTTGTGTGTGTATGTGTGTGTTTGTGTGTGCTGTCAGCTTGTTTCCTGCCCTCCCTGATGAACAGATGAGGTTGTCTAGGCAACGTGATGAGACGCAGATATGCAAATGAGACGGGAGGGTGAGCTTGCATGCACACACTGCAGTATGAGCCTCTCATTTACACACACACGCACACACACACACACATCCCGCTGATACTGCAGCACAACCTCACACATGCACAGATTAAAAATACACTCACCACAAATCCAGACGCAAATAGATGATATGATAAACTAAACACTGATTTATACTTAGAATCTAAAGCAAAATTACATCATCTAAAATCCACAAATACTTATCCCACTCCCATATGAAGTAAGGCACATATGTGGTAAAACACATTCGCATGCTTCAACAAACACACAAACAATACAAGTTTGCCTTCATTTTTGAGCAAAAAGCGATGGCAATACCAAAATCAATGTTAAAATCAAGTTTCCCCCTTTTTTTGCCTTACCGGTTGGCCCGATCCAGGGCTGGAACAGTAAATTGTGTATTTTCGGATGATACCATTGGGCTTGATGGGGGGAAGCCAGGAGACCACCACACTGCTGGCAGAGGATGGCACTGCTTTGATGCCTGCTGGAGGGCCGGGGTGATCTTCTCGGGTCTGTATATAGAGAACGTTGCTGCGGACGCCATCTCCTGCCTGTGTGTAGGCCAGGACCTGAATGCTGTAGTTTGTGAACTTCTCCAAACCCTTCAGCTCCACCTGCTCACGAGTGGTAGTGATGTTCTGCATCTCTCCCCATTTCTGGTTGAGCCCCAGTGTCTGGCCCCCACAGCAC
>TU503205
AAACCCCTGGAGTCATTTGGATTACTTTTATGATGGGTGGATGCACTTTTTGGGGCTACCATGTTTCAGGTACCATTCACTCCCATTATAACACTTAGAAGAGACAGGATAATTTTTAATATAACTCCAGTTGTGTTTGGCTGAAGGAAGAAAGTCCTATACATGGGATAATTTTCATTTTTGGGTGAACTAACCCTTTAAAAAGCATATATTGCACAGTTTGAATTCTCCATGCTATATCATGAAAATTTAGTGTATTTAAACAATGTTTTTGTGACCACAACAGTTCACACAACAGAAATTGTACAAACATGGAAAAATGGGCCATCAAGGGACTCTTGCTCTTTAAACTAGCTGTAAACTAGTTGTTAAATAATGAAGAACACACACACACACACACACACATAGATTCTCTCTCTCATTTTCTGACCCAGGAAATATTGATTGAACTGCCCCCTTCATTGTCTGGCATATTGGCCGGGTCATTGTCTGCCATCTCTTTCTCATTTAGTTGCTTTTACTCCTCTCCACGTAATAAATGACATGCTATAGCTTCATCCATCAGGAGAGAATGAAAGAAAAGGAGGAGAAGAGAGCATCAGTGACAGCATGACCCTGTGCTCACTCAAGTCCTCTGCCTTATCAGGCAATTGCACAATTATGCTGAGTAAATAAAGCAAAATTACAGTCAGGAAGCCTAAAACAGTGATTCCTGCTTGGAAACTATCAAACTGTCTGTTTTGAGATCAGATATTGACTTCTCTAGTGCATGTGGTTACAGAGCTGATTAAAGATATATGACACCGGCCTTCATGAAGACTTATTTTTCCGTTAAACTCTCACCTTTCCCTGCAGGTTCCACAGTCACCTTCTCGCTGATGTTGCCCCGACCAGCAGTGGTGACGGCGGCCGCCCAGATCAGATACTGCTGACCCCGGGTCAAGTGGGTGATTCTATATATCAGCAGCTCAGGGTTGGCTTCGTATTCGCTGGGTGCCGGTTGGCCCGATCCAGGGCTGGAACAGTAAATTGTGTATTTTCGGATGATACCATTGGGCTTGATGGGGGGAAGCCAGGAGACCACCACACTGCTGGCAGAGGATGGCACTGCTTTGATGCCTGCTGGAGGGCCGGGGTGATCTTCTCGGGTCTGTATATAGAGAACGTTGCTGCGGACGCCATCTCCTGCCTGTGTGTAGGCCAGGACCTGAATGCTGTAGTTTGTGAACTTCTCCAAACCCTTCAGCTCCACCTGCTCACGAGTGGTAGTGATGTTCTGCATCTCTCCCCATTCTGAGAGATGTGAAAAATACTGAATGACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU503204 False 1056 TUCP 0.46 3 947556 953628
TU503205 True 1323 lncRNA 0.44 3 949190 957849

Neighbor

gene id symbol gene type direction distance location
CI01000308_00750618_00755764 NA coding downstream 192710 749787 ~ 756480 (-)
CI01000308_00711286_00720426 NA coding downstream 228478 711216 ~ 720712 (-)
CI01000308_00529728_00530015 NA coding downstream 419045 529618 ~ 530145 (-)
CI01000308_00474123_00482394 NA coding downstream 465726 474064 ~ 483464 (-)
CI01000308_00110535_00111604 NA coding downstream 837532 109601 ~ 111658 (-)
CI01000308_01027964_01028971 GPR184 coding upstream 67996 1025845 ~ 1028971 (-)
CI01000308_01060962_01079388 PRKD2 coding upstream 103030 1060879 ~ 1079388 (-)
CI01000308_01085455_01103053 NA coding upstream 127098 1084947 ~ 1104480 (-)
CI01000308_01110508_01122419 STRN4 coding upstream 152622 1110471 ~ 1122932 (-)
CI01000308_01138943_01149474 SLC1A5 coding upstream 180733 1138582 ~ 1149735 (-)
G438432 NA non-coding downstream 5190 942128 ~ 944000 (-)
G438423 NA non-coding downstream 18188 927666 ~ 931002 (-)
G438352 NA non-coding downstream 114753 834171 ~ 834437 (-)
G438377 NA non-coding downstream 121106 827737 ~ 828084 (-)
G438309 NA non-coding downstream 131897 811455 ~ 817293 (-)
CI01000308_01176051_01177873 NA non-coding upstream 216715 1174564 ~ 1178142 (-)
G438460 NA non-coding upstream 282522 1240371 ~ 1241381 (-)
G438504 NA non-coding upstream 372098 1329947 ~ 1370881 (-)
G438511 NA non-coding upstream 423886 1381735 ~ 1381956 (-)
G438522 NA non-coding upstream 457096 1414945 ~ 1415173 (-)
G437635 NA other downstream 813505 135308 ~ 135685 (-)
G438671 NA other upstream 819746 1777595 ~ 1782581 (-)

Expression


Co-expression Network