CI01000308_01138943_01149474 (SLC1A5)


Basic Information

Item Value
gene id CI01000308_01138943_01149474
gene name SLC1A5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1138582 ~ 1149735 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_01138943_01149474.mRNA
ATCCACAAATGTCAAAACCTTTTTGCTGGGTCTGAAGAGAGGATATTAGAGAAGTATCTATATTTTCTAGCTCATTTGCAAGCACGCCCCGCCCCAGCACCCGCCCCATGACGTACTTCTCTCCAAGGCGCGTTTTTACACCCTTCATTTCCACGCTACCAGCACTACACGAGGAGAGAGCAGAGACTATCAGCTCGCACTAAAGACTCCTGAGACTTTTACATTCACTCTCCGAACATCAGGACACCTTCAGATAGCACAATGACGGAAGAAAAGATCGCAATAGAAGATGTAAAGACTTCCAACGGTGAAGCGCATATAGGGGACACAGCCGTCGCCAATGGCTTGAGTGACCGCAAGACGAGCGAGCCGGAGACCACCGGGCAGAAGCTGAAACGGGTCGCCATGGCCAATCTGCTGGTCATCCTGACGGTGTCAGCGGTCATCGTCGGCGTGTTCATTGGGCTCGGCGTGCGCAGCGCCGGGTTGAGCCGCACTCAGATCATTTACTTCGGGTTTCCCGGTGAGCTGCTCATCCGCCTGCTTAAAATGATCATTATTCCTCTGGTGGTCTGTAGTCTGGTGTCCGGGGCTGCCAGCATTGACCCCAAAGCCCTGGGCAAATTGGGCGGCTGGGCGATGCTCTTCTTTCTGGTGACCACTTTGATCTCGTCGGCTATCGGCGTTATCATGGCGTTCATTATAAAGCCTGGTGCCAATGACGGGAAAAAACTATCCATCATCACTCAGGATGACAGCGCTGTTCCCGAAGCCAAAGAAGTTATCGATTCGTTTTTAGACTTGATAAGAAATATCTTCCCATCGAACCTGGTATCAGCTGCCTTTCAGTCGTATGCCACTGGTTACAAGATTGTGAAAAATGACACCAACGCGACCATCTTCTCCATGGAAAAGGTTCCAGTTGGCACAGATGTGGATGGCATGAACATCCTGGGTCTCATCGTGTTTGCTATGGTATTTGGGGTGGCTTTGAGGAAACTTGGAGAGGAAGGAGAGATCCTTATTAAGTTCTTCAACTCTTTCAATGAGGCCACCATGGTGTTGGTCTCCTGGATCATGTGGTATGCACCACTGGGTATTATGTTCCTGGTTGCTGCTAAGATTGTGGAAATGGAGGATGTTGGCTTGCTGTTCGCCAGCCTCGGGAAGTACATCGCCTGCTGCGTCATTGGCCATGCCATCCACGGTCTCTTCATCCTCCCGCTCATTTACTTCGTGATTACACGGAAGAACCCCTACACTTTCTTGCTGGGATTGGTCACCGCTTTGGCTACTGCCTTTGGAACCTCATCTAGCTCTGCCACGTTGCCCCTAATGATGAAATGTGTGGAGGAGAACAACGGTGTGTCCAAGCATATCAGCCGCTTCATCCTGCCCATCGGAGCAACTGTCAACATGGACGGAGCCGCCTGCTTCCAGTGTGTAGCTGCAGTGTTCATCGCTCAGCTTAACGGGATCCCACTGGACTTTGTCCAGGTCATCACCATCCTCGTGACTGCGACGGCGTCTAGCGTGGGAGCTGCTGGCATCCCTGCTGGAGGTGTGCTGACGCTGGCCATCATTTTGGAATCAGTGGGGCTTCCAACCAGCGATCTGTCCCTCATCTTGGCTGTGGACTGGCTTGTAGATCGCACTTGCACCGTCATCAATGTTGAAGGTGACGCCTACGGAGCAGGTCTTCTGCAGTATTTCGTGGATCGCACTTCCAGTAAAAAGGAGGGAATTGAGCTAACTAAGGTGCGAGTGGAGAAAGAAGAAGATCCCGCCTCCAGGCCAGAAAGCTCTCCACTTATCGAGAAACAGGGAAACTTTGAATTGGAAGAGGTTGCTGGACCTAAACCCTGTGACAAGGAGTCCATTATGTAGATTTGCACAGTATTTCAACAAACTTTCCTTCCCTACCTGACTGATCTCACTAAATCAGTCTCTGCATCTACACAGTGACCATGGGAGAGATGCTGGTTTAAATTAACATGCTCTTGACCCTCCTCTGTACCTAGCTCTTATGAAAAGAGTCTGCCAAAACTTATGCACATTTAGATGGAAACATGCTTGAACAATTATTTATTAGATGATGGACATTTTGGAACTTTTACTCCTTTTGAATATACAAAAAGTCAGTCCGGCCTTTTAAAATGATCTTATTATTATTATCATTATTATTATTATTATTATTATTATTATAATACATGCCCTGATAGTTCTTAATATATGCTCCTAAATTAAA

Function

symbol description
slc1a5 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC1A5 (solute carrier family 1 member 5).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05616 SLC1A5; solute carrier family 1 (neutral amino acid transporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_01138943_01149474.mRNA True 2248 mRNA 0.48 8 1138582 1149735

Neighbor

gene id symbol gene type direction distance location
CI01000308_01110508_01122419 STRN4 coding downstream 15650 1110471 ~ 1122932 (-)
CI01000308_01085455_01103053 NA coding downstream 34102 1084947 ~ 1104480 (-)
CI01000308_01060962_01079388 PRKD2 coding downstream 59194 1060879 ~ 1079388 (-)
CI01000308_01027964_01028971 GPR184 coding downstream 109611 1025845 ~ 1028971 (-)
CI01000308_00750618_00755764 NA coding downstream 382102 749787 ~ 756480 (-)
CI01000308_01176051_01177873 NA coding upstream 25025 1174564 ~ 1178142 (-)
CI01000308_01288263_01292626 GBE1B, GBE1 coding upstream 138528 1288263 ~ 1292626 (-)
CI01000308_01296704_01298972 NA coding upstream 146948 1296683 ~ 1299140 (-)
CI01000308_01300803_01359626 NA coding upstream 150884 1300619 ~ 1360097 (-)
CI01000308_01420955_01460290 NA coding upstream 271035 1420770 ~ 1460438 (-)
G438434 NA non-coding downstream 180733 947556 ~ 957849 (-)
G438432 NA non-coding downstream 194582 942128 ~ 944000 (-)
G438423 NA non-coding downstream 207580 927666 ~ 931002 (-)
G438352 NA non-coding downstream 304145 834171 ~ 834437 (-)
G438377 NA non-coding downstream 310498 827737 ~ 828084 (-)
G438460 NA non-coding upstream 90636 1240371 ~ 1241381 (-)
G438504 NA non-coding upstream 180212 1329947 ~ 1370881 (-)
G438511 NA non-coding upstream 232000 1381735 ~ 1381956 (-)
G438522 NA non-coding upstream 265210 1414945 ~ 1415173 (-)
G437635 NA other downstream 1002897 135308 ~ 135685 (-)
G438671 NA other upstream 627860 1777595 ~ 1782581 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008344 slc1a5 coding NC_007126.7 CM002899.2 11643659 ~ 11671173 (+)