XLOC_008344 (slc1a5)


Basic Information

Item Value
gene id XLOC_008344
gene name slc1a5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11643659 ~ 11671173 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016732
TATGTGATTTTAAGCAgggatttttaatttatttttcatatgcgacattgcattatttatttattaacagacAATGACTCAAACATTTTAACTGATTTACAGACACAAAAATGTTTCAAGTCTAACAAGAGTTTGATATACCCtaccaaaaatattttaaacatatttgtactttgcCACAGTCCTTTAAATGCTCTACCCCTTTTGTCAACATAATATGTTCGATTTCATGAAATgtctttagtttttaaatatttcgattcaaaaacaaaaaggagatttttattcattatacatttgtttttatgtattttagttATTAATGTTTTTACTTTAGCCGATAACGActcaaacatttacacacactgaaACGTTCAGTCTAACAATAGTTTAATGTAccctaaaattgtttttatttacggGGCGACATGGTGACAtagtgggtcagttggcatttcggtgtagagtttgcatgttctccccgtgttcacgtgggtttcctctgggtgctctgtttTTTTCACCCAGTCCGTCTGTCCAATTGGACGTCAGTCCAATGACGTGttgtaggtgaactgggtaagctaaattggtgtgattgagtgtttcccagtgatgggttgcaggtggaaggccATCAGCTgagtaaaacgtgctggataagtaaaaagaaaatgatgtttttattaacatatttgcCATAGTCCTTTAAATGCTTTGACGATTTtgtcaacaaaaaatgtttttttagcatttaaaaacgTATTTGTTATTAAGCGACAATGAGAATCAGCATGTTGCTAATTGTTTGCATAAATATGTCACACTAAAGCACAATGAAAGATTGTTTCCCccaaatgttgacattttattttacaaaagtttttaaaacattaatgtaGGCGCTTTTGTTTATAGAATTACGTCAAATTTCATTAGATTTAGATGCTAAATACTACATAACTTTCATAAGATATGAGCCTAAATGACCACAAGACCAACGTTTGTGATCTACGCAAGTCATATAAGCTTTGCGCTAATTTCATGCACGCCCCGCCCCAAGAGTGACGTGAAATGGAAACGTACTCCCTTGAACCCGCATCTACGCAGTCATTTCCAAACACGCGGCGAGAAGCGCAAGAGAAGCCCGCAGACagctttctctcacacacatacatacacaccaaAGACTTTTACGTTCACAAACACAGCTTTAGAATACACAATGACAGAAGAAAACATTTCTATAGAAGATGTAAAGGCGTCAAATGGCGAAGCGCACCTGGACGTTCCGCCGCACGCCAACGGCTTGAGTGAGCACCGGAGGAGCGAGCCGGAGAGCACCGCGCAGAAAGTGAAGCGCTTCGTCCTGGCCAATCTGTTGGTCATCCTCACTGTGTCCGCGGTCATTGTCGGCGTACTGATCGGCCTCGGGGTGCGAAACGCCGGGTTGAGCCGCACGCAGATTATCTACTTCGGCTTCCCCGGAGAGCTGCTCATCCGCCTGCTTAAAATGATCATCATCCCTCTGGTGGTCTGCAGTCTGGTGTCCGGCGCGGCCAGCATTGACCCTAAAGCCCTGGGCAAGCTGGGCGGCTGGGCGATGCTCTTCTTTCTGGTGACCACTCTGATCGCCTCTGCCATCGGCGTTATTATGGCGTTCATCATTCACCCTGGCTCCAGCGATGGCAAGATGTCCCAGCTCAACGCGCAGGACGACAGCTCGGTTCCCGAAGCCAAAGATGTCATCGATTCATTTCTAGACCTGATAAGAAACATCTTCCCATCTAACTTGGTTGCAGCTGCTTTTCAGTCGTATGCCACTGGTTACAAGTTTGTCAAAAATGATACCAACTCTAGCGTCTTATTGGAAAAGGTTCCAGTCGGTACAGATGTGGATGGCATGAACATTCTGGGTCTTATTGTGTTTGCCATGGCCTTTGGTGTGGCTTTGAGGAAGCTTGGAGAGGAAGGAGTGATCCTTATGAAGTTCTTCAACTCTTTCAATGAGGCCACCATGGTGCTGGTCTCCTGGATCATGTGGTATGCACCTCTGGGTATTATGTTCTTGGTTGCTGCCAAGATTGTGGAAATGGAGGATGTTAGCTTGCTGTTCACCAGCTTGGGGAAGTACATCGCCTGCTGTGTCATTGGTCATGCCATCCACGGGCTCCTCGTCCTTCCTCTCATTTACTTCATAATTACACGGAAGAACCCCTACACTTTCTTGCTGGGATTGGTCACTGCTTTGGCTACTGCATTCGGAACCTCCTCCAGCTCTGCAACATTGCCCCTAATGATGAAGTGTGTTGAGGAAAACAACGGCGTGTCCAAGCACATCAGTCGCTTCATCCTGCCCATAGGTGCAACCGTCAACATGGACGGAGCTGCATGTTTCCAGTGCGTCGCTGCTGTGTTTATCGCTCAGCTGAACGGGATCCCACTGAACTTTGTGCAGGTCATCACTATCCTTGTGACTGCGACGGCGTCCAGTGTGGGGGCTGCTGGGATTCCTGCTGGAGGAGTGTTGACGCTGGCCATCATTCTGGAGTCAGTGGGGCTGCCAACCAATGACCTGTCCCTCATCCTGGCTGTGGACTGGCTTGTtGATCGCACATGCACAGTCATCAATGTTGAAGGTGATGCCTATGGAGCAGGTCTTCTCCAGTATTTGATTGATCGCCATCCCAACAAAAACGAGGAGGAGGAGCTGGATAAGATACGAGTAGAAGAGGATGATGCCACTCCCAAACCAGAAATTCGTCCACTCATCGAAAAACAGGGCAACTTTGAACCAGAAGAGGCCGCTGGACCCAAACCTTGTGAAAAAGAGTCCGTCATGTAGACTTTTCTGCAATATTCCAACACACTTTCCTACCAGCTTGATCACACCAAATCAGTCTCTGTCTACACTGAGACCAGGAACAGAGGCAGGCTTAGATCAAGACAAAACAAAGACTACGTCATTTTGACCTTCTTCTATGCCCAGCTCTTCATGAAGAGTCAAAACCTATGCACATTTAGGTGAGGAAATGCTTGAATTATTTATTAGATCCTGGTCAAACATTTTTggcatttttctttttcctttttttatgttTGCTTAAGTCCTTTTAAATCCGGCCTTTTAAAATACTGCTATTATctatgatttaattattattattattattaatattatgcatACCCCTAATTATTCTGAATATGCTCCTAAATGAAAACTCAGCTGTTTTAGTGCAAAACATTTTCCTGATATAAGCCAAAGCACATGCAgaaataatcttaaatccttCCCTTtctaacacaacacacacataatataATGGCGCTCTGAAATACCTCATTCCTGCCGATTCCCTTTAAAACACCTCAGATGCCGGTCACACTAACAAGTGCTGATACTCTAGCTATTAAAAAATGTTGCAGGAAGCCTTGAACTTTGACTGTTAAGAGCTGATTTTTGCCTTCTTCGTCTTTATGCCTACACTAATAAATTTCAGCAATGGTCAAGTTATGTTTGAAGGTTAATGCCGGCACAATAATCTATGGGTCACATGCAGAGAGTACGCCTTGTGTCTCAAAGCTTCAAGGTTGTTTGTCTGAGACTGTGGAAATGGCCTTGAGGCTGCAGGTGAGAAAGCTCACTGTGTGCAGGTCCATGTCTGCACACAAAAAAGGTGGGATATGCTCAAGTTTTGTTCCGTTTTAGATGAATTCCAATGATAAGGAAGTGAATCTAGACGGaaacagatttttgttttgttttaaagctaGCATGAGATTAAGCAGCTTCTCCTTTGTGTGGTGTATGAATGTTTgtttgaaacactttttttttttctgtcgaaTCTACACTCAAAATAATGATTTTTGATGCTTGTTCAAACTCCTTATTTAAAATGCGCTGAAACACATGTATTTtggtgttcaatccacttaaatttattttaaaaacaattaagttaacttaatggatttgtgttgggacaacatgaaggtattGTGGAATCCAGAATTTTTGTTCTACTTTGTTTTCGGTTttagaaatttgttttaaaaaagaaacatttgctAATCTTTTTATGGTCAAGTATACAGAAATGAAGTCTAAcgttttgtgttttaattttattaaaaaaaatttatattgcagAAGAGCACAAATATAATATGCCTGCTGTTTTCTGAAGGTAGATATTGTGTAAGagtaaatagttttaaatggatagttcaaccaaaaataaatgtttactcactatttactcactttcCAAACTTGTtcgagtttctttgttctgttgaacacacacatatttagaaaaattatgaaaactgtaaccattagcccctttcacacataaagacctttccagaaaattaccagcatttttttttcagaaaaggaTCATGTGTGATTGTTTAAAACAAGCACAGCcttttagagctcatttttggttaatgatgtcagaatttactggtattttacaATAGATGTGTGAATttgtcttttccggaaaaattccgtagcCTTCTTGTTTGTACCAGTAAAGTCATTCCAGTAATCTActagatatttaccggtatcactgtgtgatgAGTTGCAGCTATTAACTTTAATAGTTGGAAAAGCAAACACTATTAAAGTCAAGGGTTACTAGTTTTAGTAACAAaagaactcaaacaggtttgggacaagtgaaggGTAAGCAAATGATGATctgttttgggtaaactatccctttaaacaccaTTTACTGTTGAATATTTAACTGTAACTACTAGTTTGACTGGATTACttattcagcttttttttaaatgttataaaaatgttttataaatgtgtaaccTAAACACACCAGCAGAAGGAAATTATTGGACGACAGGGTGAGAGAAGTTCGTCAGTGTACTCTATGTTGACCAAATATTTATCATGGTGAAATTCAATTCAATACAATAGATGTCGTGGTGCTGCCATATTTTCAATCTGATGTAGATAAAAACAAGCTGTGAGGGCTAAAAATTGTGTGTTCAGTGCATTTAAACTGATTGTTGCTGATTAAACATCTAATACAAAGAACTTTAGCTAGACCCAAAGGAAATAAGTTATGAAAATTGTGATCTCGGACATGTATACGTTCATCACCATAGTAATAATTGTGTTTATCCCTCACAGTGTTGTTTTCAGCCACATTAAATTTTGTAAGTTTTTAATTAGTGTTTGTAGAAATCACTTCAGTTTAGCTTGCGGTTAATCAGCGAGTGCTTAAATCTGACCAAAGATCTATATTCAAAcacgtgtgtatgtatgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatagggtGTTTGGTGCTTGGAATCCACACCATTAAGTCTCTCATTTATGTTTCGTTCTGTTTGATGTCATTTCAAATAAcagatgtattattttaaatgaggCATCTGTTCAGCTTTCACTCCTTTAAAAGCCTGTAGTATGTGGTGTACTGTATAGGCTTGTCATTCCAGGTGGCTGTAGTATGTCTGTGTGCATGTTTAATGAATGGTTGCTGTAAATGGTCGTTTGATGATGTCATCGGTGAAGCCAAAGAGTACTGTTAAGAGAACCTGTGAATGTACTCCACACTGACTGCAGAATAAAGTCTCTTTTTATAATGAATTAACTGTGGTGTCATCCTTTTTTCAATCACTAAAATCAGGTAGGTGctgattttagat

Function

symbol description
slc1a5 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC1A5 (solute carrier family 1 member 5).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption
ko05230 Central carbon metabolism in cancer
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070501-4 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC1A5 (solute carrier family 1 member 5).

Ensembl:

ensembl_id ENSDARG00000099186

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016732 True 5783 mRNA 0.39 8 11643659 11671173

Neighbor

gene id symbol gene type direction distance location
XLOC_008343 BX324136.1 coding upstream 78150 11565391 ~ 11565509 (+)
XLOC_008342 ndufc2 coding upstream 200445 11427620 ~ 11443214 (+)
XLOC_008341 si:ch73-321d9.2 coding upstream 249337 11381532 ~ 11394322 (+)
XLOC_008340 CR538726.1 coding upstream 338585 11303325 ~ 11305074 (+)
XLOC_008339 BX323573.1 coding upstream 777099 10863850 ~ 10866560 (+)
XLOC_008345 NA coding downstream 11916 11683089 ~ 11691460 (+)
XLOC_008346 strn4 coding downstream 22451 11693624 ~ 11757647 (+)
XLOC_008347 FO704748.1 coding downstream 143796 11814969 ~ 11820549 (+)
XLOC_008348 prkd2 coding downstream 154193 11825366 ~ 11875820 (+)
XLOC_008349 gpr184 coding downstream 212631 11883804 ~ 11909082 (+)
XLOC_008463 BX663520.1 misc downstream 9581018 21252191 ~ 21252282 (+)
XLOC_008337 CT573316.1 non-coding upstream 886716 10750208 ~ 10756943 (+)
XLOC_008338 NA non-coding upstream 888894 10752071 ~ 10754765 (+)
XLOC_008350 CR848025.2 non-coding downstream 311277 11982450 ~ 11986634 (+)
XLOC_008351 NA non-coding downstream 333630 12004803 ~ 12009399 (+)
XLOC_008353 NA non-coding downstream 388067 12059240 ~ 12362508 (+)
XLOC_008356 NA non-coding downstream 836626 12507799 ~ 12525596 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01138943_01149474 SLC1A5 coding CI01000308 null 1138582 ~ 1149735 (-)