XLOC_008340 (CR538726.1)


Basic Information

Item Value
gene id XLOC_008340
gene name CR538726.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11303325 ~ 11305074 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016728
AATATATAAAGTGTTGTATGAAACAGATCTGTGTTGAGAGAAGCTCTGGTCCGTGTTTCTTCCTAAAAACCGAGGTTTGAGAGCCAGCGCTTTACAACTGAAGATGAATATAAGGATGAGAAGGCGAAAGGACAATGCAGAGCTGGTGGGCAATGTGgaggcgcattaggtagtgctgtcacctcacagcaagatggtcactgtttcgagcctcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccgcgttcgcgtgggtttcctctgggtaagttggcagttcattctgcggtggcaatcccagattaataaaaggactaagccaaaaagaaaatgaatgaatgaatgaacattcagTAGGCTACATAACTTTAAAACAGGCACACAAAAGTACAGTACGACACTTGACAGAGTATCATCTATTGAAAAAAAGGTTTTACTAtatgttcaaaacatgattcTTATTTGTTAATACATTtgtaaaagaataataattattagttattGGCATAATTATTGGTATTCAATACATAAGTAATTCTACATTTATCTTGAAGTTTTATTGTAACATTctaatgtaacaaaataaaatgtaaaaaaaacactaaattgaattcaaaattaatttaatattgtgGTTATTTtgcaaagaaatgtaaaaaaaaaaaattatgcttttATTTCCTATATTAAGAATACAGATAGTGTCATAATCACGTTTATTTGGATAAATGTGTTAACTTGCAGTCTATATGTGGAGtattaatacattaaaacaagTTACATGAACAGAACTGCAGAAAGAAAATGGCTTATAAGCAATACTGAATCACTGTAGTCATGGCTTTATGATAAATGTATCACATATGAcatcaaaaaatatataccaAAAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097179

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016728 True 908 lncRNA 0.33 2 11303325 11305074

Neighbor

gene id symbol gene type direction distance location
XLOC_008339 BX323573.1 coding upstream 436765 10863850 ~ 10866560 (+)
XLOC_008337 CT573316.1 coding upstream 546382 10750208 ~ 10756943 (+)
XLOC_008338 NA coding upstream 548560 10752071 ~ 10754765 (+)
XLOC_008336 CU856523.1 coding upstream 816130 10485534 ~ 10487195 (+)
XLOC_008335 BX000985.2 coding upstream 1407339 9895858 ~ 9895986 (+)
XLOC_008341 si:ch73-321d9.2 coding downstream 76458 11381532 ~ 11394322 (+)
XLOC_008342 ndufc2 coding downstream 122546 11427620 ~ 11443214 (+)
XLOC_008343 BX324136.1 coding downstream 260317 11565391 ~ 11565509 (+)
XLOC_008344 slc1a5 coding downstream 338585 11643659 ~ 11671173 (+)
XLOC_008345 NA coding downstream 378015 11683089 ~ 11691460 (+)
XLOC_008463 BX663520.1 misc downstream 9947117 21252191 ~ 21252282 (+)
XLOC_008350 CR848025.2 non-coding downstream 677376 11982450 ~ 11986634 (+)
XLOC_008351 NA non-coding downstream 699729 12004803 ~ 12009399 (+)
XLOC_008353 NA non-coding downstream 754166 12059240 ~ 12362508 (+)

Expression


Co-expression Network