XLOC_008346 (strn4)


Basic Information

Item Value
gene id XLOC_008346
gene name strn4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11693624 ~ 11757647 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016736
ATGGAGGCGGAAAGATCCGGAGGGATGGCGGGCGGGACGAGTCAGAGCCCCGCGGGAAGTGGAACTGGGCGCAATCCTAACGGGCCGAAGGCTGTGCTCGGTCCCGCTCCCTCCGCAGTAGCAGCCGCCGCGGCCGGGCCAATGGCCGGATCCTCCCAGTCGCGAGATCAGCAGGACGGGGACGCAGGCCTCTCGCTGCCCGGGATCTTACATTTCATCCAATATGAATGGAGCCGCTTTCAAGCTGAGAAATACCGCTGGGAGGCCGAGCGAGACGAGCTGAGGGCTCAGGTGGCATTTCTGCAGGGTGAAAGGAAAGGTCAGGAGAACATGAAGCAGGATCTGGTGCGGAGAATTAAGATGCTGGAATACGCACTCAAACAGGAGAGGGCCAAACACCAGAAGCTGAAAAGTGGCACTGACCAGAGTCCTGGAGAGAAGAAACCAGAGACAGAAGCTGAACCAATACCCAATGGGCCTGCAAATTCAGACTCTGAACCGACCAATCAGATGCCTTGGAAGGAGGGACGCCAGTTATTGCGCAagtctgtgtgttttctgtgcatTCATTCTCAAAAGTGGTTATTATCTTGTGTTGACCCTGTGTGCGTAATTGTAATCAGGTATCTGGAGGAGGTGGGATACTCCGACACTATTCTGGACATGCGATCCAAACGCGTTCGCTCTCTGTTGGGTCGAAACAGCCCGGAGGCGAATGGGCCTCCTTCCAGCGAACCCACCACAGAACCAGAGCCGCATGTAGGagtaggaggaggaggagagtcaCTGCTGGTGCGGCAGATTGAGGAGCAGATCAAACGGCGTGCTGGAAAAGAGAGCTCTAAAGAGCGGATGGGCAGCTCAGTCCTGGACAAAATCCCTTTCCTGCGTGGATGTGAGGACGATGACGAGGATGACAGTGATGAAGAGGAAGACTTCCAGGGCATGACCACAGACTGCATTGATGGACGTAAAAACAAGAAGTCCAGAGCCAAGATGGGCGGAGAACCCATGACCACTGACCTGGACCCagaggatgaggatgatgaagatgactcTGAGGACGCCCTGGGAGAGTTTGACTTCTTGGCCTCTGGAGAAGAAGGGGAAGGGGCTGGAGAAGCTCGCATATCTGGAGACGGTCGAGAATTAGGTTCAGAGAACCGCCGGAACAAGTTACAAGGCATTATGTCAGATTTTCCCCCCAAACCCACTCCACCTCCGTCTATCCCGGGCCAGGCTCGCTCCGGTGAGGGAGGTGCTCTGGGCTTTTCATCCGATGTCTTCATTCTGGATGCAGTCGGAGGAGGAGACATGAACCTCGGAGAGCTGGCTGACCTCACTGTTGCCAACGACAACGACCTCACCATTGACTTGCAGGACAGTCGAGAAGAGTTCAAGAAAACGTGGAACCCTCGCTTCACACTGCGAAGCCACTTTGACGCCATCCGAGCGCTGTCCTTTCACCCCAGTCAGGCCGTGCTGCTGTCTGCATCTGAGGATGGGACGCTCAAACTGTGGAACCTCAACAAGGCCATGCACTCAAAAAAAAATGCAGCGCTGGACGTTGAGCCTATTTATACTTTCCGAGCACACAGTGGTGCTGTTCTTTCTCTGGCTATGGGAGAGGAAGGAGAATCATGCTTCAGCGGGGGTCTGGATGGCACCATTCGTGGATGGAAAATCCCAGACCTCAACGTGGATCCTTACGACAACTATGATCCTGGTGTGGAGAGTAGTGTTTTGTCAGGCCACGAGGACGCTGTCTGGGGATTGGCCTTCTCCTCCAGCCTACAGCGTTTGGCCTCCTGCTCCGCCGATGGGACAGTGCGCATCTGGGACCCTCATAATTCTTCCCCGTGTGTTTCTGTCTTCAACAAGGAGAAAGAACATGGCACTCCCACCTCGGTTGCCTTTGTAAATGCAGACCCGTCCCAGGTCGTGGTGTCTTTCGATGGGGGCGAGACTCTGCTTTATGACCTTAACACAGAGCAAAGTATCATGGTCCTGGAGACTCAGACTAAAGATGGCAGCGAGCTGATTAACCGTGTGGTCAGTCATCCGTCCCAACCCATCTCCATTACAGCCCATGAGAACCGCACCATCCGCTTCCTGGACAACAACACAGGGAAAGTGATTCATTCAATGGTGGCTCACCTGGATGCTGTTACCTGTCTTGCCACAGACCCTAAAGGCACTTACCTCATCTCCGGCAGTCATGACTGCTCAGTGCGCTTGTGGATGCTGGACAATCGCACGTGTGTGCAGGAGATCACAGCGCACAGGAAAAAACATGATGAGGCCATTCATGACGTGGCCTTCCACCCGTCGCAGCCCTTCATCGCCAGCGCCGGGGCCGATGCTCTCGCCAAGATCTTTGTTTAACTTTCTCACCG
>TCONS_00016735
ATGGAGGCGGAAAGATCCGGAGGGATGGCGGGCGGGACGAGTCAGAGCCCCGCGGGAAGTGGAACTGGGCGCAATCCTAACGGGCCGAAGGCTGTGCTCGGTCCCGCTCCCTCCGCAGTAGCAGCCGCCGCGGCCGGGCCAATGGCCGGATCCTCCCAGTCGCGAGATCAGCAGGACGGGGACGCAGGCCTCTCGCTGCCCGGGATCTTACATTTCATCCAATATGAATGGAGCCGCTTTCAAGCTGAGAAATACCGCTGGGAGGCCGAGCGAGACGAGCTGAGGGCTCAGGTGGCATTTCTGCAGGGTGAAAGGAAAGGTCAGGAGAACATGAAGCAGGATCTGGTGCGGAGAATTAAGATGCTGGAATACGCACTCAAACAGGAGAGGGCCAAACACCAGAAGCTGAAAAGTGGCACTGACCAGAGTCCTGGAGAGAAGAAACCAGAGACAGAAGCTGAACCAATACCCAATGGGCCTGCAAATTCAGACTCTGAACCGACCAATCAGATGCCTTGGAAGGAGGGACGCCAGTTATTGCGCAaGTATCTGGAGGAGGTGGGATACTCCGACACTATTCTGGACATGCGATCCAAACGCGTTCGCTCTCTGTTGGGTCGAAACAGCCCGGAGGCGAATGGGCCTCCTTCCAGCGAACCCACCACAGAACCAGAGCCGCATGTAGGagtaggaggaggaggagagtcaCTGCTGGTGCGGCAGATTGAGGAGCAGATCAAACGGCGTGCTGGAAAAGAGAGCTCTAAAGAGCGGATGGGCAGCTCAGTCCTGGACAAAATCCCTTTCCTGCGTGGATGTGAGGACGATGACGAGGATGACAGTGATGAAGAGGAAGACTTCCAGGGCATGACCACAGACTGCATTGATGGACGTAAAAACAAGAAGTCCAGAGCCAAGATGGGCGGAGAACCCATGACCACTGACCTGGACCCagaggatgaggatgatgaagatgactcTGAGGACGCCCTGGGAGAGTTTGACTTCTTGGCCTCTGGAGAAGAAGGGGAAGGGGCTGGAGAAGCTCGCATATCTGGAGACGGTCGAGAATTAGGTTCAGAGAACCGCCGGAACAAGTTACAAGGCATTATGTCAGATTTTCCCCCCAAACCCACTCCACCTCCGTCTATCCCGGGCCAGGCTCGCTCCGGTGAGGGAGGTGCTCTGGGCTTTTCATCCGATGTCTTCATTCTGGATGCAGTCGGAGGAGGAGACATGAACCTCGGAGAGCTGGCTGACCTCACTGTTGCCAACGACAACGACCTCACCATTGACTTGCAGGACAGTCGAGAAGAGTTCAAGAAAACGTGGAACCCTCGCTTCACACTGCGAAGCCACTTTGACGCCATCCGAGCGCTGTCCTTTCACCCCAGTCAGGCCGTGCTGCTGTCTGCATCTGAGGATGGGACGCTCAAACTGTGGAACCTCAACAAGGCCATGCACTCAAAAAAAAATGCAGCGCTGGACGTTGAGCCTATTTATACTTTCCGAGCACACAGTGGTGCTGTTCTTTCTCTGGCTATGGGAGAGGAAGGAGAATCATGCTTCAGCGGGGGTCTGGATGGCACCATTCGTGGATGGAAAATCCCAGACCTCAACGTGGATCCTTACGACAACTATGATCCTGGTGTGGAGAGTAGTGTTTTGTCAGGCCACGAGGACGCTGTCTGGGGATTGGCCTTCTCCTCCAGCCTACAGCGTTTGGCCTCCTGCTCCGCCGATGGGACAGTGCGCATCTGGGACCCTCATAATTCTTCCCCGTGTGTTTCTGTCTTCAACAAGGAGAAAGAACATGGCACTCCCACCTCGGTTGCCTTTGTAAATGCAGACCCGTCCCAGGTCGTGGTGTCTTTCGATGGGGGCGAGACTCTGCTTTATGACCTTAACACAGAGCAAAGTATCATGGTCCTGGAGACTCAGACTAAAGATGGCAGCGAGCTGATTAACCGTGTGGTCAGTCATCCGTCCCAACCCATCTCCATTACAGCCCATGAGAACCGCACCATCCGCTTCCTGGACAACAACACAGGGAAAGTGATTCATTCAATGGTGGCTCACCTGGATGCTGTTACCTGTCTTGCCACAGACCCTAAAGGCACTTACCTCATCTCCGGCAGTCATGACTGCTCAGTGCGCTTGTGGATGCTGGACAATCGCACGTGTGTGCAGGAGATCACAGCGCACAGGAAAAAACATGATGAGGCCATTCATGACGTGGCCTTCCACCCGTCGCAGCCCTTCATCGCCAGCGCCGGGGCCGATGCTCTCGCCAAGATCTTTGTTTAACTTTCTCACCG

Function

symbol description
strn4 Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Orthologous to human STRN4 (striatin 4).

GO:

id name namespace
GO:0030425 dendrite cellular_component
GO:0051721 protein phosphatase 2A binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070501-3 Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Orthologous to human STRN4 (striatin 4).

Ensembl:

ensembl_id ENSDARG00000102902

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016736 False 2396 mRNA 0.55 16 11693624 11757647
TCONS_00016735 True 2318 mRNA 0.55 17 11693624 11757647

Neighbor

gene id symbol gene type direction distance location
XLOC_008345 NA coding upstream 2164 11683089 ~ 11691460 (+)
XLOC_008344 slc1a5 coding upstream 22451 11643659 ~ 11671173 (+)
XLOC_008343 BX324136.1 coding upstream 128115 11565391 ~ 11565509 (+)
XLOC_008342 ndufc2 coding upstream 250410 11427620 ~ 11443214 (+)
XLOC_008341 si:ch73-321d9.2 coding upstream 299302 11381532 ~ 11394322 (+)
XLOC_008347 FO704748.1 coding downstream 57322 11814969 ~ 11820549 (+)
XLOC_008348 prkd2 coding downstream 67719 11825366 ~ 11875820 (+)
XLOC_008349 gpr184 coding downstream 126157 11883804 ~ 11909082 (+)
XLOC_008350 CR848025.2 coding downstream 224803 11982450 ~ 11986634 (+)
XLOC_008351 NA coding downstream 247156 12004803 ~ 12009399 (+)
XLOC_008463 BX663520.1 misc downstream 9494544 21252191 ~ 21252282 (+)
XLOC_008340 CR538726.1 non-coding upstream 388550 11303325 ~ 11305074 (+)
XLOC_008339 BX323573.1 non-coding upstream 827064 10863850 ~ 10866560 (+)
XLOC_008337 CT573316.1 non-coding upstream 936681 10750208 ~ 10756943 (+)
XLOC_008353 NA non-coding downstream 301593 12059240 ~ 12362508 (+)
XLOC_008356 NA non-coding downstream 750152 12507799 ~ 12525596 (+)
XLOC_008357 NA non-coding downstream 862460 12620107 ~ 12621628 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01110508_01122419 STRN4 coding CI01000308 null 1110471 ~ 1122932 (-)