CI01000308_01766688_01769436 (FBXO46)


Basic Information

Item Value
gene id CI01000308_01766688_01769436
gene name FBXO46
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1766536 ~ 1769669 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_01766688_01769436.mRNA
ACATTCATTTCCGATGATTCACTACTCTGTTCAACTATTCATTGCTGTAATTCTGATTGAGACATTTTAACGTATAGATTTCAGTGAAACTAAGTCTTGCCTTTTTTCCTCTTTAGTCCTCAGATGGAGTAATCTGTCCAGCTGGAAACTGCAGACCTGAAAAGTGAAGATGAGTGGTGAATTGCAAAGTAGCTGCCCAGTATAGAGGCAGGTATGCTCCCCATGGGCTCACAATGAACCGTGACACCTTTTCCCACATCCGGCTCTGGTGCCCACGGCCCTTTGGCACCTACTCCCAGAATAAGCCGTATAGCAATGGTACAATTCTCAATGGAACAACTACCACCCACTGCAAGGCTGACGATTCGGGGCTTACAACCATAGAGACCCATGGAGTTGGTGAGGAGCAAGATGAGGATGTTGGCACTGAAAACACCCCACCAGCCTCCTCATCTACCCTTCTGGCTCCACCACTACCTGCACCACCCTCTCCAAATTCACAGATGGAGGATGGCAGGGTACTGCTTGATACCTGGTATGTCATCAAACCAGGCAACACCAAGGAGAAAATTGCCTTCTTTGTAGCTCACCAGTGTAATGGTGCTGGAATCCCCAGGCCTAGTGCCATGAAAGTCAAGGGAAACTGGGCTACCGATTGTACCAAGGCCAAGCGACGTCGTCGCTGTTCCTCTTATGACCCTCCCACTAGGGCTCAAAATGTTGCCATTGATGTACCCCCGGAATCCAACTTGACGGAGGATGGCGTTGGAGTTAGTGAGACAGATCTGCTCTCTGTGGCCGAAATGGTCGCCCTTGTAGAACAGCGTACAGCCTTGGCTCTTCAAGGTATGGTAGCGCAAGGACAAACTAGTCCTTATACAGTTCATCAGAAACCTGTTGTAATCCTCTCAGAACCCCCTTCATCTGCACCAACTTCTCAAAGTGACTTTGATCTGCTGCAGCAACAGCAGGAATCCCGACGGGTTGCTCAGGCTGTTGCGCAGTTTGAATCTCGGCAGCAGAATATCGACAGTACAACTTTGCGGCCTGAACTTAGTGGTTCAGGAGGAGACCGCATTCACACTGGTGAGTCTGTGGGTGGTGCTCCAAGCCATGGACGAGGGGAAGTACGGATTGCTTTTCGGGTGTCAAGTCTGGACCCTCGCACCCAGTCTGAGCCTGTTGGCCGCCCTAAATGCATGTTTATGAGTTGTGGAGTCGGAGGGGGGCAAGCAGGAGCCAGGGGCAAAGAAAAGATCACTTGTGACCTCTACCAACTGGTTAGTCCCTCATCTCGAGATCCAGGTGCCCTCCTTGCTGGCTCACCAAAGGCCGATCCGCTCGGGGAAGGTATCAACGACAGACCTCCCTCCGCAACGCCAGATCCCAACCAAGACTCTGCCTCAGGAGAGAAGGCAGCAGTGGCTCGAGAGCGGATGACCGGATTCCACGTTGAGGTAGTGGTCACGGGTGCAGTAGACCAATGTGTCTTCTATGGGAAAGACAGCACAGAGAATGTTCAAGAAGAGACTGTATGTTTTGCTATGCCCAATGGGGCTAATTCAACTGAATCCTCAGAGGATCCACCTCCTGGCCAGCTGTTCTTTCTGCAGTCACCAGCTACTGAAGATGAGAGTTGTTCAACAGTAAACAGCGGGATGCTGTCTTTAGACTGTGCAAACAACAATGGACCAGTGGGGCCTACTGTAGAGAGGCCAGACTCCCCACTGGCAACTGTGGATGATTGTTCTGATCCTCCGTTGTGCCGCCTCTACCGACACGTCTCCCATGACTTCCTTGAGATTCGCTTTCAGATCCAGCGGCTTCTGGAACCACGGCAATACATGCTTTTGCTTCCGGACCACATCATGGTCAATATCTTCAGCTACCTGCCTACCCGTTCACTAGCGGCCCTCAAATGCACTTGCCATGATTTCAAGACCCTGATCGAGACCTACGGTGTGCGTGCTACAGACTCTCGCTGGAACCAGGACCCGTTGTACCGCGATGACCCCTGCAAGCAGTGCAAGCGGCAGTATGAGCGGGGAGATGTGTCGCTCTGCCGCTGGCACCCTAAACCTTACCACCACGACTTGCCTTATGGACGTTCCTACTGGATGTGTTGTCGGCGCACAGATAAGGACACACCTGGCTGTCGAGTTGGGCTACATGATAACAACTGGGTACAGCCATGCGAGCTGGTTCAGGCCCGCGCCAAAAGAGACGATGGGAGGCTGTCTGTGTGCTTGTTGGCAGAGGCAGCTTTTGCCAAAGCAGTAATTAGCTTCATGTGGCTGAAAGAACAACAAAGAACAGGACGACTCAAAACCTGATTCTAGCCTTAACCCTGTTTGTTCTGCTCATTCCACCACTCTGTGAAATCTTACAAACAGAAACATTGATGCTGATCCCTCTGGTTTGGGAGACCGTTCTAGGTTTCACCATCAATCTGCTATTGGGAATTTTTGCCTCTAAAATGAATAAA

Function

symbol description
fbxo46 Predicted to enable metal ion binding activity. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human FBXO46 (F-box protein 46).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10320 FBXO46; F-box protein 46

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_01766688_01769436.mRNA True 2485 mRNA 0.51 2 1766536 1769669

Neighbor

gene id symbol gene type direction distance location
CI01000308_01744749_01748810 NA coding downstream 16721 1744749 ~ 1749815 (-)
CI01000308_01699956_01730072 TNFRSF19 coding downstream 36464 1699956 ~ 1730072 (-)
CI01000308_01660122_01665088 BACH1A coding downstream 101448 1658222 ~ 1665088 (-)
CI01000308_01559930_01576786 NA coding downstream 189270 1559756 ~ 1577266 (-)
CI01000308_01420955_01460290 NA coding downstream 306098 1420770 ~ 1460438 (-)
CI01000308_01810724_01812603 NA coding upstream 40626 1810295 ~ 1812817 (-)
CI01000308_01860118_01871423 NA coding upstream 89942 1857832 ~ 1872426 (-)
G438622 NA non-coding downstream 116625 1647280 ~ 1649911 (-)
G438624 NA non-coding downstream 135852 1630082 ~ 1630684 (-)
G438525 NA non-coding downstream 140780 1624540 ~ 1625756 (-)
G438620 NA non-coding downstream 142237 1623667 ~ 1624299 (-)
G438522 NA non-coding downstream 351363 1414945 ~ 1415173 (-)
G438741 NA non-coding upstream 124001 1893670 ~ 1900872 (-)
G438434 NA other downstream 812908 947556 ~ 957849 (-)
G437635 NA other downstream 1630851 135308 ~ 135685 (-)
G438671 NA other upstream 7926 1777595 ~ 1782581 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008370 FBXO46 coding NC_007126.7 CM002899.2 14592624 ~ 14600296 (+)
striped catfish (Pangasianodon hypophthalmus) G218191 fbxo46 non-coding NC_047608.1 CM018554.1 791773 ~ 863445 (-)
tiger barb (Puntius tetrazona) G174238 NA non-coding NW_025047772.1 JAEQBD010000117.1 405521 ~ 405870 (+)