XLOC_008370 (FBXO46)


Basic Information

Item Value
gene id XLOC_008370
gene name FBXO46
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14592624 ~ 14600296 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016770
TGCAGCTGCTTGTCAACAAAATGGCCTTCCTCAATTGCTTTTCGAGGACCTACTGACTACTTCTGTTTTGGTAAAACAGTACTGATATCTGGTTGAACAATAGAGGCgagcattctttttttttttaaaacacagcaTTTGTCAATTCATTGCTGTGTTCATAAAAGACAGACACTGTTGGTCTGTCCACATGAATGTTATGGTTTTTGGTTTTATTCTCGAGTTAGCTTAACAGGAGCTAACAGTCTACCTGCAAACCCCCATCGACCTCAGCTTTCATCGGTGTGATTGTTTTTAAAACCCCGCAGTGAAATTTGAACAACTGCTGGTTGAAATTCAACAGAGTAACCCCTTTTTTGGTTACAAAAGTAACGCTGTCAAAATGAGAACAAGTCCTCAGATGGAGTAATCTCTTGAGCTGGAACTTGTAGACCTGAAAAGTGAGAATGATTGGTGAAATGCAAAGTAGCTGCCCAGCATAGAGGCAGGTATGCTCCCCATGGGCTCACAATGAACCGTGACACCTTTTCCCATATCCGACTGTGGTGCCCACGCCCCTTTGGCACCTACTCACAGAATAAGCCATACAGCAATGGTACAGTTCTCAATGGAACAACTACCACCCACTGCAAGGCCGATGATTCAGGACTTACAGCTATAGAGACCCATGGAGTCAGTGAGGAGCAAGAGGAGGATGTTGGCACTGAAAACACCCCACCAGCTGCTTCATCTACCCTTCTGGCCCCACCACTACCTGCATCACCCTCTCCTAATTCACAGATGGAAGATGGCAGAGTATTGCTTGATACCTGGTAtgtcatcaaaccaggcaacacTAAGGAGAAAATTGCCTTCTTTGTAGCTCACCAGTGTAATGGTGCTGGAATTCCCAGGCCTAGTGCCATGAAAGTCAAGGGAAACTGGGCTACTGATTGTACCAAGGCCAAGCGCCGTCGTCGCTGCTCCTCTTACGATCCTCCCACTAAAGCGCAAAATGTTACAGTTGATGTACCAGCAGAACCTAACTTGACGGATGATGGTGTTGTAGTTAGTGAGACTGATTTGCTCTCAGTGGCAGAAATGGTGGCTCTTGTAGAACAGCGTACAGCCTTGGCCCTTCAGGGCATGGTTGCACAAGGTCAAACTAGTCCTTACACAGTCCATCAGAAACCTGTTGTAATCCTCTCAGAACCTCCTTCATCCACACCAGCTTCTCAAAGTGACTTTGATCTGCTGCAGCAACAACAGGAATCTAGACGCGTTGCTCAGACTGTTGCGCAGTTTGAATCTCGGCAGCAGAATCTTGACAGTACAACTTTGCGGCCTGAACTAAATGGTTCAGGAAGAGACTGCATACAGACTGGTGAGTCTGGAACCCCAAGCCATGGCAGAGGGGAAGTAAGGATCGCGTTTCGGGTTTCGAGTTTGGACCCTCGCACCCAGTCTGAACCTGTTGGCCGCCCTAAATGCATGTTTATGAGTTGTGGAGTTGGAGGAGGGCAGGCAGCAGCCAGAGGCAAAGAAAAGATCACTTGTGACCTTTATCAACTGGTTAGTCCCTCATCTCGAGACCCAGGTGCCCTCCTGGCTGGGTCACCCAAGGCCGATCCTCTTGGGGAAGGTATCACTGATAGGCCTCCCTCAACAACGCCAGATCCTAACCAAGACCCTGCCTCAGGAGAGAAAGCAACAGTTGCTCGAGAGCGGGTGACTGGCTTCCATGTTGAGGTTGTGGTCACAGGTGCAGTAGACCAATGTGTCTTCTATGGGAAAGACAGCACAGAGAATGTTCAAGAAGAGACTGTATGCTTTGCTATGCCCAATGGAGCTAAATCAACTGATGCCTCAGAGGACCCACCTCCTGGCCAGCTGTTTTTTCTGCAGTCAGCAGCTACTGAAGATGAGAATTGTTCAGCGGTAAACGGTGGGATGCGGTCCTTAGACTGTGCAAACAACAATGGGCCATTGGGGGCTACTATTGAGAGGCCAGACTCCCCACTGGCGACTGTGGATGATTGTTCTGATCCTCCGTTGTGCCGCCTCTACCGTCACGTTTCCCATGACTTCCTCGAGATTCGCTTTCAGATCCAGCGGCTTCTGGAGCCACGGCAATACATGCTTTCGCTTCCGGACCACATCATGGTCAACATCTTCAGCTATCTGCCCACCCATTCTTTAGCAGCCCTCAAATGCACCTGCCATGACTTCAAGACCCTGATTGAGACCTACGGTGTGCGTGCTACAGACTCTCGTTGGAACCAGGACCCGCTGTACCGTGACGACCCCTGCAAGCAGTGCAAGCGACAGTATGAGCGAGGAGATGTGTCGCTCTGTCGCTGGCATCCGAAACCTTACCACCACGACTTGCCTTATGGACGCTCCTACTGGATGTGTTGTCGGCGCACAGATAAGGACACTCCTGGCTGTCGAGTTGGGCTACATGATAACAACTGGGTACAGCCATGTGAGCTGGTTCAGGCCCGCAAAAGAGATGATGCGAGGTAAAGGATTGGGTCGGGGGATTGTCATTACTCTCCCTGCTTTTGCTCTACTGAAACCTCATGCCACTGTACTATTTATGGTTGAGCTCGCCTCTCCTATCTTAGCTTGTTAACCTTGCTATCATTGTCAGTATCAGTTCTTATCAGTGCACCATACTTAATTATCTGTCCCCTCGGGCGCAGATGAGTATTCTGGAAGTTGAAAACCCTAAATGAGGTAGTCTGCTGCATGGGACTAGTGTTTTGATTTGGTTAGGAAATTCTGATGGCTTGGCAATCTTTAAAGACCAGCTCTGATTCTGACCCCAACCTTGCAAAAAATAACCTGCAGGCTAGACACAGGACTTGTGAGTAAAACTTTGTGGGGTTGTTGTCAAGTTAAAATTTGCTGTCTCTTTGGTCAAAAGCGCGCAAAATGATGTCACTTTACAAATCCCTGATGTCACTTTGTAATCAACAGTTTGACTGCTTGTTGGATTTTTCTGTTttcgtgtgtgaatgtgagtgaataatatttttttttcttgttggtgGGCTTCATTTTTCCTCTCCTTCAAATTGATTTATGAAATCAGTCTTTATTTCTTGACCAAACCTTTCTTCTTTTCTATCTCTTTGCCTGCCAGGCTGTCTGTGTGCTTGTTGGCAAAGGCAGCTTTTGCCAAAGCAGTAATTAGCTTCATGTGGCTGAAAGAAGAACAACAAAGAACAGGACAACTCAACCTGATTCTAGCCTTAACCCTGTTCGTTCTGCTCATTCCACCAGTCTGTGAAATCTTACAAACAGAAACATTGATGCTGATCCCTATGGTTTGGGAGACCGTTATAGGTTTCACCGTCAATCTGCTATTGGGAATCTTTGCCTCTAAAGtgaataaaagttatttaaaactgGA

Function

symbol description
fbxo46 Predicted to enable metal ion binding activity. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human FBXO46 (F-box protein 46).

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDARG00000099814

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016770 True 3397 mRNA 0.47 2 14592624 14600296

Neighbor

gene id symbol gene type direction distance location
XLOC_008369 si:ch211-11n16.2 coding upstream 172060 14378829 ~ 14420564 (+)
XLOC_008368 NA coding upstream 342695 14249389 ~ 14249929 (+)
XLOC_008367 si:dkey-243k1.3 coding upstream 386559 14202114 ~ 14206065 (+)
XLOC_008365 si:ch211-116o3.3 coding upstream 419032 14141045 ~ 14173592 (+)
XLOC_008366 clca5.1 coding upstream 429078 14154174 ~ 14163546 (+)
XLOC_008371 sars2 coding downstream 42345 14642641 ~ 14667095 (+)
XLOC_008372 or130-1 coding downstream 226670 14826966 ~ 14853579 (+)
XLOC_008373 diabloa coding downstream 254370 14854666 ~ 14858189 (+)
XLOC_008374 CR936977.2 coding downstream 261039 14861335 ~ 14964241 (+)
XLOC_008375 si:ch211-149e23.4 coding downstream 573315 15173611 ~ 15218956 (+)
XLOC_008463 BX663520.1 misc downstream 6651895 21252191 ~ 21252282 (+)
XLOC_008363 BX927244.2 non-coding upstream 539158 14045121 ~ 14053466 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 634774 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 non-coding upstream 1067636 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 non-coding upstream 1083256 13421514 ~ 13509368 (+)
XLOC_008379 NA non-coding downstream 747346 15347642 ~ 15351457 (+)
XLOC_008384 NA non-coding downstream 850507 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 1029210 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 1178692 15778988 ~ 15782552 (+)
XLOC_008393 NA non-coding downstream 1386758 15987054 ~ 16018789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01766688_01769436 FBXO46 coding CI01000308 null 1766536 ~ 1769669 (-)
striped catfish (Pangasianodon hypophthalmus) G218191 fbxo46 non-coding NC_047608.1 CM018554.1 791773 ~ 863445 (-)
tiger barb (Puntius tetrazona) G174238 NA non-coding NW_025047772.1 JAEQBD010000117.1 405521 ~ 405870 (+)