XLOC_008367 (si:dkey-243k1.3)


Basic Information

Item Value
gene id XLOC_008367
gene name si:dkey-243k1.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14202114 ~ 14206065 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016768
AGTTATACTCAGTAGTTAGTCTGCTATGGAGGTTTCTCTTATTTTTGTTGTCTTCATTGGGTTGTTCCTGAGTCCAGCTGATGGACATGTGCTGGATCATTTCTGGGATTCACCTGATTGCGTCAAGTTTTTCTACAAGGAGAAAATTCCAGATTTGGGAGCTTTCCAGCCAAATTTGGTCCGGATTTGTCAACGCTTTCTAAACACCTATCACTTCGCCACACTGTATGACACTTACCACCGCATTGCTGTATATTCCGCTTATATCTTTGAGCCAAGCAGTGGTGGAGGAAGAGAGAAACGCTGGTTTGTGGAGCCACAgCTGGTGAGTCCCGCATGGTCCACTGAAATGGAAGATGGGTATAAGCTGTCTCAGCAGAACCCAGACATCTATCTGGGAGAGAAACAGGCTCTGAATGAAGACTACACAAACTCAGGATTTGATCGAGGCCATCTAAACCCTAATGGACATCATGCAGTTCCAAGTCGTAATGCCACCTTTACCTTGACGAATGTGGTCCCTCAAAACCCAACGCTGAACCAGAATGCTTGGAATAAACACGAGTCTAAACTGACCAGCTTGTTTAAAGCAAACTGTCATCAGGCCTATGTTCTGGTTGGTGCCATCCCTTCTTCTAACAACTGGATCATCAAGAACAATGTGAAAAGGGTAAACATCCCAGAGTACTTGTGGGATGCTTTCTGCTGCATTGATCAAAATGGCCGGCCCATCCTAAGCGGAGCTGCGACTGCCCTCAACACAGAGCTGAATGTTGTTGTGGAAAGAAGCCTAGATGAGATGGTCGACTTCATACAGCAGTTCTCTGATGCACCGGTGAATGAGCTGTTTAGCGGCCAATGCAAAGCTGCTAACTAACAGCttcaaataaatgaaagaaatctGTTAAGCATTAGTAATAGCACGTGTGTGTTTTCAAATCCCATCAACATTACACacagagacttattttagaaTAATTTATAAGATTTATTTTCTTGGAGATTAAGAAAGAGATTCAAAATACACCAAAATGCCAAGTAATATAGTTGAAAAGGCAATCATTTTTGTAACTGCAGTATAATAGTTTGATTTTGTGTTTTGAGCATATATTCTGGTATATATTTACCTTTAGCccacttagggcgtactcacactatgccaccaaaaccgtgcccaggccctttcgtttaagaagtgtgagt

Function

symbol description
si:dkey-243k1.3 Predicted to enable endonuclease activity; metal ion binding activity; and nucleic acid binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-191 Predicted to enable endonuclease activity; metal ion binding activity; and nucleic acid binding activity.

Ensembl:

ensembl_id ENSDARG00000102343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016768 True 1203 mRNA 0.42 3 14202114 14206065

Neighbor

gene id symbol gene type direction distance location
XLOC_008365 si:ch211-116o3.3 coding upstream 28522 14141045 ~ 14173592 (+)
XLOC_008366 clca5.1 coding upstream 38568 14154174 ~ 14163546 (+)
XLOC_008364 clca1 coding upstream 81683 14109652 ~ 14120431 (+)
XLOC_008363 BX927244.2 coding upstream 148648 14045121 ~ 14053466 (+)
XLOC_008362 zgc:162730 coding upstream 215353 13984879 ~ 13986761 (+)
XLOC_008368 NA coding downstream 43324 14249389 ~ 14249929 (+)
XLOC_008369 si:ch211-11n16.2 coding downstream 172764 14378829 ~ 14420564 (+)
XLOC_008370 FBXO46 coding downstream 386559 14592624 ~ 14600296 (+)
XLOC_008371 sars2 coding downstream 436576 14642641 ~ 14667095 (+)
XLOC_008372 or130-1 coding downstream 620901 14826966 ~ 14853579 (+)
XLOC_008463 BX663520.1 misc downstream 7046126 21252191 ~ 21252282 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 244264 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 non-coding upstream 677126 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 non-coding upstream 692746 13421514 ~ 13509368 (+)
XLOC_008358 NA non-coding upstream 1065650 13001193 ~ 13136464 (+)
XLOC_008379 NA non-coding downstream 1141577 15347642 ~ 15351457 (+)
XLOC_008384 NA non-coding downstream 1244738 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 1423441 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 1572923 15778988 ~ 15782552 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01951635_01956348 NA coding CI01000308 null 1951635 ~ 1956362 (+)