XLOC_008364 (clca1)


Basic Information

Item Value
gene id XLOC_008364
gene name clca1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14109652 ~ 14120431 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016761
AGATACTGCAGCCATGGACTGGAGAACGGTGTTTGTCGTATTATGGATGCTGCTGCCGTACCCTTCAACTGCAATTAAACTAGATGGTGGTGGCTATGTTGACATTACGATTGCAATTGGTGCAAAAGTCAAGCAGGATGATACACTTATCGATAAAATCAAGGAAATGGTCACCGATGGGTCTTTTTATCTTTATCATGCTTTGGATAAAAAGGTCTATTTGAAAGACGCCACAATACTAGTTCCATCCCACTGGAGCTGTAAGAGTTGCAGCAAAGCGAGAACAGAATCATTTGAAAAAGCCAAAATAAAAATTGACCATGCTAAATTGATGGAACCAAGAACTAAACTGTACGGAGAATGTGGAAAAGGGGGAGAGTACATTCATTTCACTCCAGACTTTCTCTTAAATGACTCTGCCATTCAGATGTATGGACCAAGAGGAAAGGTTTTTTTGCATGAATGGGCTCATCTGAGATGGGGTGTTTATGATGAATACAATGAAGAAAAACCCTTTTACCTCTCTAATGGCCGTGTTGAATATACAAGATGTACTACAAACATTGAAGGTCAGATTTTTGAGGTTAATGGAGGATCTCCTCAATCATGCCGCATTAATCCAGAAACGTTTTTACCTAGCTCGGATTGCAAGTTTTTTCCAAACAAAGATCAAAACACTGACAGCTCTGTAATGTTTTCACCAAGTCTGGAAGCCGTGACCACCTTTTGTCGTGAAACAGAACACAACTATGAAGCCGAAACCCAGcaaaatataatatgtaataacaAAGCAACATGGACGGTAATATTCGAGGATTCTGTAGATAAAGATGCACTGTCGTTTCTACCACCACTGCCATCGACTCCATCGCCGCCAATATTTAAACTTTTGCAGCGGAAGAAACGGGCTGTTTGTCTCATCCTTGATGTCTCAGGAAGCATGGCAACAGAATCTAGAATTCTTCGCATGAGGCAGGCGGCCACACATTTACTGCGGAACTATGTTGAGGAACAGGCCAGTGTTGGAATTGTAAAATTCAGTACTGCAGCTTCTATTGTGAGCTCATTGACTATTATTGAGAGTGATGCCACAAGAGATCATCTCATTAACTTGTTGCCCGAAACTCCAGGTGGATCCACAAACATGTGTAATGGCCTTCGTCTAGGCTTACAGGTACTTTCAGAAGACGACATGGATGCAATAGGAGATGAAATAATTTTTCTGACAGATGGTCAGGCAACAGACGACGTTACATTGTGTATTCCGGATGCAATAAACAGTGGTGCTATTATACACACAATAGCTTTAAGTGACAGTGCACATAATGCATTGCAAGAGATGGCAGACAAAACTGgtGGAATATTTTTCTATTCCAAAGATGATTTTACCTCCAACCAATTAATGGATGCATTTGCTTCACTTACATTATCCACTGGAGATCATTCAAATGAACCTGTTCAGCTTGAGAGTGTGGGAACCAGAACATCTGATTGGTTCAATGGGACGGTATCAGTGGATCAGACTGTTGGCAACAAAACCAGCTTTGTGATCATTTATGAACGAATTTTTCCCGCTGTTTACATACAGTCACCGAGTGGCATTGTCTACACTGAGGCACAAATGAATCATGATAATCGGCTGAAAACAGTCACTTTAAAAGTTGCTGAAACCGCAGAGCCTGGAGACTGGGCGTACAGTATCAAAACTTCAACAGATCAGGCATTTACAATAACAGTAACAAGTCAAGCATCACATGAGGATGTTCCTCCAATCATTGTCAAAACCCGCATGAACCAGCAGGTCAGCGATGGGACTAAACCTATGACGGTGTTTGCTGAGGTCAGTCAGAATTACAGGCCTGTGATAAATGTTGAAGTGTGGGCTACGCTGGAGCCTGCAACTGGGCCTATACAAAGTTTACAACTCCTGGACAATGGAGCAGGAGCCGATGTTATGGCAAATGATGGAATCTATTCCAGATATTTCACAAAAATGGTAAACGGGAGATGCAGCTTGAAAGTGAGAGCGAAGAATCAAGATGGAAAGGCCAGATTTGCGGTCCAGAAAAGGAGTGGTGCCCCATACGTACCTGGATATGTGGTAGATGGTGTTGTAGAGCTGAACCCGCCAAATCCTTCAGTTTCTGATGAACCAATTGAGGTTGGAAGCTTCACCAGAACAGCCACCGGTGAGAGTTTTGAGGTGACTCTAACAGGCTCAACACCACCAAATTTCCCTCCTAGCAAAGTGACAGATCTAGGAGCTAAAATCCTTGAGGAGGCTGTGCTTCTCAGCTGGACGGCTCCTGGTGAAGACCTCGACCAAGGAAGAGCTAAATCTTACGAGATCAGATGGAGCTTTGACCTGGACATGCTTCGGCAAGATTTCAGCAATGGCCATGTAGTCGACACAGCAACTGTCTCACCTCAGGAGGCTGGATCAGTGGAACAGCACGCATTCAATCTCAGTTTACCAATCCAAAATGGCACCACGCTCTTTTTTGCGGTTCAGACTTTGGATGAACACGATGCCAAATCTGATACCTCCAACATTGCTTCAGCATCAATGATCCTCCCTAATCCAAAACCACCGGGAATATCAAACCCAGGCTTGAATTTGACTGTTCTTGTCAGCTCTTTGTGTGCGGTAACTATCGTCATATGCATTATTGCTGGTGTAACCACATGGGCAGTGAGACGAAGAAGACCTGCATTAAGAATCTGATCCTAACAATGTCAAATCAATCTTTATGCTTTATGATGAATTGATCACAATGTATATGTAACAGATTTAGAATATGTTTTATCAAATACAATTTCTTAATTGCTGTATTAAGGTGATATTGCCTCTGTATTTTTTTAGAATTCTCATTTATGACACATTCTCAGTCAGTTTGTCTTATTCTGATTAAATGTAAGCACTTTTAAACAGTATTTGTTCAGTGGTAGATCCACAATGCGAACATATTCATAATATTGTGCAATATGTGATTATCATTCTGATTTACATTGAGTTGTAAAAGATCAAATAGGCAAAATAAAATGGATGTATATACATGGTGGCTGTTTCTATGAGTTGGTTTTTGTAAACTTAAACTTAACAGGGAGCTATACAGTCATCATTTATATCCATCAGCCAATGATTAGCAACTGATCAGGGTTGGTGTAGTGTTTTACTTTTACTGTTCTTTGATATTTTTAGCACTGTAGATAACTGGCCACCTTATTATGTTTGCCAACACTGAGTTAAGCCTTCAGAAATGCCTTTGGTCAGAGCCCTCTAAAATATCATTAAGGTCTTTTGTCTGTTTGTGTAGTAAGCCAAGCACTGGGTGCAGACTCTTACACTATTAGATCTGCAATCTCAGAATTGCAATTTCACATACAGTTTAAGTccgaattaatagccccc

Function

symbol description
clca1 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in asthma and chronic obstructive pulmonary disease. Orthologous to human CLCA1 (chloride channel accessory 1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04924 Renin secretion
ko04972 Pancreatic secretion
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-030131-6221 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in asthma and chronic obstructive pulmonary disease. Orthologous to human CLCA1 (chloride channel accessory 1).

Ensembl:

ensembl_id ENSDARG00000016290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016761 True 3412 mRNA 0.41 14 14109652 14120431

Neighbor

gene id symbol gene type direction distance location
XLOC_008363 BX927244.2 coding upstream 56186 14045121 ~ 14053466 (+)
XLOC_008362 zgc:162730 coding upstream 122891 13984879 ~ 13986761 (+)
XLOC_008361 CABZ01056919.1 coding upstream 151802 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 coding upstream 584664 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 coding upstream 600284 13421514 ~ 13509368 (+)
XLOC_008365 si:ch211-116o3.3 coding downstream 20614 14141045 ~ 14173592 (+)
XLOC_008366 clca5.1 coding downstream 33743 14154174 ~ 14163546 (+)
XLOC_008367 si:dkey-243k1.3 coding downstream 81683 14202114 ~ 14206065 (+)
XLOC_008368 NA coding downstream 128958 14249389 ~ 14249929 (+)
XLOC_008369 si:ch211-11n16.2 coding downstream 258398 14378829 ~ 14420564 (+)
XLOC_008463 BX663520.1 misc downstream 7131760 21252191 ~ 21252282 (+)
XLOC_008358 NA non-coding upstream 973188 13001193 ~ 13136464 (+)
XLOC_008379 NA non-coding downstream 1227211 15347642 ~ 15351457 (+)
XLOC_008384 NA non-coding downstream 1330372 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 1509075 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 1658557 15778988 ~ 15782552 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_00041387_00048067 NA coding CI01000308 null 41347 ~ 48253 (-)