XLOC_008362 (zgc:162730)


Basic Information

Item Value
gene id XLOC_008362
gene name zgc:162730
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 13984879 ~ 13986761 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016759
AGCACAGAGCTACCGGGGCTTTATCACAACTTCTGACGGCAACATTCCTTCACAAAAACACTTCAGTATGTCCGATACCTTTGGCGAAAGTCTCATGCGCaaCTTCTACAATCTGGGTTTAGATGACTCGTTTCCACACCTATCCAGCTCGTCTGATCGGCTCATCGACGATTGTTGGCCGGTAGACAGCTGGAGCGACCGAGCACCCAGCAAACCCCAGTTCCCCATCAAAGCAGACCGATCCATGAGTCTGAACGACAGCTTTAGCAGGATGAAGCCCCACGACGTGCCCCCACCACCCGGATTTCCTCCCCTGGCAACCCTTCCTTCAAACCGGTATAAGACCGAGCTGTGTCGAAGCTTCCAGGAGCACGGCAGCTGCAAATACGGTGCCAAATGTCAGTTCGCTCACGGAGAAAATGAGCTGCGAGGTCTTTACCGCCACCCCAAATACAAAACACAAGCCTGTCGCACTTTCTACCAGTTTGGATACTGTCCGTACGGAAGCCGCTGTCACTTTATCCACGAGGAGAAGAGCTCTCTGTCCGAGCAGAACCCGCGGCAGCTGCGCCAAAGCGTCAGTTTCGCCGGTTTCACCCGCAGCAGTTCCCCTCCGAGCTCATACGAGTCCCTGAGCTTCACCCGGGCGCCCTCGGTCTCGCCTCCGCCCGAGGAGATCTTGTCCCCGGTCTTCAGCGACTCCTCCCGCGACATGTTCTCCTTCAGCCGACACAGTAGTGGAGATATCCACAACAGCGCGCTCTTCGCGCCGGAGACTCGGTCACGATGTGTCTGCGGACACGGAAATAATTTCCCGGTGTCCGGCGGCGGGCTATACATCAAGGAAGAGCTGAAGAAAGCCCCTCTGCAGCGCTTCTCCTCGGAGGACTCTCTGTCGGACCGCGAGAGTTACAGCAGCACCGGCAGCTCCAGCGGCTCCGAGTCTCCCACTTTCGACGGCTCGACCGGGAAGCGCCTCTCCGTTTTCGCGCGAATGTCTGTGTCTGACTAAGGACTTTATTTGTTTCCAGACGGTCAAACGAGTcttaattatgttaatttattACTATCATTGTTATATACTTGCTAAATCCGAATATTTTGATATCAAACTGCCATCCGAAGCCTGTGAAGGCATTGTTTTTATAATGGTGTAtacctattattattttctgtgatATTGTCTTCCATTTGCTTTCTTGCGTTGTTTGGCAGTAAGCGCTGCAGTCAAGTGCCTTAACCAAGAGATCATAACCTATGACATAATGGCACAAGCAGAGCTTGTGTCAGAAATGCATATATATAATTATCATATATGTATCATTTATATCAACCAACAATGTGACAAACTTGAGAAAAATGACCATACATTCACTCACAAAGAATGCACTTTACAAATCTATACTGGGAGAATGTTTATGTAGCAACCAAAGCATTATGATGTTAGGTACCTGTTAGAAACAAACCTATTTATTGGACAAGAGCTGTTTTGACCCCCCTGGTCGGGTCCTTACTTAAGGAATCTTGGTCTTTATCAGGGACTGTAACAGTACAGTATTTCTATAtggtagtttgcttcatttgcaatgttttttttttctttttttgtaattgtatagacctaactaatatatttatttagtatttattgaagtttttaatgaattttttacttatttatcaaCATGTGCCATGGAGAAAATCCAAGGAGTGTGGACACAGTGTGATGGATTGGATCCAACTGAGCAATgtaataaatgcaaattttgaaAACC

Function

symbol description
zgc:162730 Predicted to enable metal ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6366 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000103720

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016759 True 1775 mRNA 0.47 2 13984879 13986761

Neighbor

gene id symbol gene type direction distance location
XLOC_008361 CABZ01056919.1 coding upstream 27029 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 coding upstream 459891 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 coding upstream 475511 13421514 ~ 13509368 (+)
XLOC_008358 NA coding upstream 848415 13001193 ~ 13136464 (+)
XLOC_008357 NA coding upstream 1363251 12620107 ~ 12621628 (+)
XLOC_008363 BX927244.2 coding downstream 58360 14045121 ~ 14053466 (+)
XLOC_008364 clca1 coding downstream 122891 14109652 ~ 14120431 (+)
XLOC_008365 si:ch211-116o3.3 coding downstream 154284 14141045 ~ 14173592 (+)
XLOC_008366 clca5.1 coding downstream 167413 14154174 ~ 14163546 (+)
XLOC_008367 si:dkey-243k1.3 coding downstream 215353 14202114 ~ 14206065 (+)
XLOC_008463 BX663520.1 misc downstream 7265430 21252191 ~ 21252282 (+)
XLOC_008368 NA non-coding downstream 262628 14249389 ~ 14249929 (+)
XLOC_008379 NA non-coding downstream 1360881 15347642 ~ 15351457 (+)
XLOC_008384 NA non-coding downstream 1464042 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 1642745 15629506 ~ 15665686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_00110535_00111604 NA coding CI01000308 null 109601 ~ 111658 (-)