XLOC_008358


Basic Information

Item Value
gene id XLOC_008358
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 13001193 ~ 13136464 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018907
TAAACGTCCTGATACCTGAACCGGGAAAAGCAACGTGGCTGAAGAGCTctgacaacaaacaaacaaacaaacaatcacacCGTGAATAAGCTCATAAACGTTTGGCGAACGACATGACACGTCTTTCTCTCGTCTCCTGCAGTGACTTTGACACGCCTTCCTCCTCAATAACGTCGGCGTGGGATTGCAGaggtcGCTGCAGTTTTCTGGAGGTCCCATTTTCGCCCACAGTCACATACATTGATGCAGCCTTTAAGACtgaaattaaacaAGTGGCTGAGTCTCCTGGAAGCGTCTGGACGACAGATCAAAGCCTCTCGCTGTCTCTGTGCTGGTCCAGCTTCTCTCCATCAGTCCTGGGGCTCCGGAGACAGGCTTCTCCTTCACACATCACGGCTTGGATTGTTTCCCCGAGTGCGGACACTGGGCTTTGATGGTCAGTTTGCTGTGACTGAGACCCAAGGGTAGGCTTAGAAGGACTGAACATGGGAAAAGAAGATGAAACGGAGGCCGGAAAAAGAGACGAGTTTTGCTTGCCAGAGATCCGTTTTGTCAGCGGCATCCACGATTTGCAGGATTGAGTTAGCATGTTTTTGGGTTGTTTGTAATTGCTGTGGGAATTGAGCTGcggaaaaaaaaaaggtcttctaTCTCAAGTGTCAAACTGTGACCAAATTGCTTATGTTTTTTAGTGTTATATTCTGTTGTCAACTTATTTGATGTATAGACAAATATAGGACATAAATTGAACATTAATATTGATTGTTAAATTGACTAATCATAGAATAATcaatcaattattaaattattagattttttgttattaatcaaTTAAAGTGCCCTTATTATGAAATATAAAAGGTTCATACTTTAGTTTGCAGTGTTC
>TCONS_00018908
CGTCCTGATACCTGAACCGGGAAAAGCAACGTGGCTGAAGAGCTctgacaacaaacaaacaaacaaacaatcacacCGTGAATAAGCTCATAAACGTTTGGCGAACGACATGACACGTCTTTCTCTCGTCTCCTGCAGTGACTTTGACACGCCTTCCTCCTCAATAACGTCGGCGTGGGATTGCAGTATAACTGCCCTGACCTTCCCAACTCTGGACAAGAAACTCTGACAACGACTGGATTAGACATGTTTGTGACCATGATGATGACAATGATGGGATTCCTTATGACGGGTGTCTTTGATGACTGACGGGGATCAGGAGAATCGTGGACGTTCACCCTTCTGCATCACCAGCTCTCGACTCAATGGACTTTATCGATTTAATGATTTAAGGATGAGGTCCTCTTGAATACCATGAGCATTCAACTAGAAACTGCAATTACCTGATTGGACCCATAAATCCAAATTCCACAAAGGAAAAGCTCTTTAAGAAATACCTGGACGTGGCCCATTGAATCAGGTGAATAGCTCCATTCCTGGCAATTACAGGAGTCTATATAGATGCACTCGGAGCAGCTGTAAAGTGCCTGGGCATTGTTAAAAGCACACTGTCAAAGGGTCATGTGAATGTGCAATTGCCTGCGAGGAGCCTTAAGCGTTTTAAATCACAAATGGTATTTGCCTTTGGTGTTTAATGATGTGTTTTTTTCTTGTACTTGGACTGAGAGCAGAACTCCATGCCAGATATATCAGATGTAGACCTGCCTCAATATTTTGGGATCTAATACAGTCTGCATAGTTATTTCTGATACTCAAAGTTAGTGCATTGCTCAGAATCAgagtttattaattaatatgtagTGTATTAAGTAGTGATTAATACAACCCGGCgcgcaccttgatgtcaaaacaacatcaatttgACATTGACGTAAGAAAAgcatttaaaaagtgcaattaatgTGATTTCAAATCCGTTTTAAAATCCACACATTGATTGgcaaacaatgttttatttatctgaAAGCTTTAATTACAAATGATCTGTTTAAtgctggt
>TCONS_00018909
GTCCTGATACCTGAACCGGGAAAAGCAACGTGGCTGAAGAGCTctgacaacaaacaaacaaacaaacaatcacacCGTGAATAAGCTCATAAACGTTTGGCGAACGACATGACACGTCTTTCTCTCGTCTCCTGCAGTGACTTTGACACGCCTTCCTCCTCAATAACGTCGGCGTGGGATTGCAGTTTATAACACTTGTTTATAAAAGAGACGCCTAACCGATGAAAATGCTGCTGGATGCACTGGCTGGATTGTCAAGTgaagtatagaccatttcaatatggTGATGTCACTTTTCCCATAAACATTTCCtacttgttatcaaactatttcaaaaCTGGTACAAGAATCAATATAATC
>TCONS_00018762
GAACCGGGAAAAGCAACGTGGCTGAAGAGCTctgacaacaaacaaacaaacaaacaatcacacCGTGAATAAGCTCATAAACGTTTGGCGAACGACATGGTAacACACGTCTTTCTCTCGTCTCCTGCAGTGACTTTGACACGCCTTCCTCCTCAATAACGTCGGCGTGGGATTGCAGTGGCTGAGTCTCCTGGAAGCGTCTGGACGACAGATCAAAGCCTCTCGCTGTCTCTGTGCTGGTCCAGCTTCTCTCCATCAGTCCTGGGGCTCCGGAGACAGGCTTCTCCTTCACACATCACGGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018907 False 886 lncRNA 0.42 4 13001193 13091234
TCONS_00018908 False 1059 lncRNA 0.41 4 13001197 13136464
TCONS_00018909 False 360 lncRNA 0.42 3 13001198 13001808
TCONS_00018762 True 303 lncRNA 0.52 3 13001210 13090746

Neighbor

gene id symbol gene type direction distance location
XLOC_008357 NA coding upstream 379565 12620107 ~ 12621628 (+)
XLOC_008356 NA coding upstream 475597 12507799 ~ 12525596 (+)
XLOC_008355 tmprss4a coding upstream 541858 12429206 ~ 12459335 (+)
XLOC_008354 il10ra coding upstream 612759 12377887 ~ 12388434 (+)
XLOC_008353 NA coding upstream 638685 12059240 ~ 12362508 (+)
XLOC_008359 CABZ01009248.1 coding downstream 285050 13421514 ~ 13509368 (+)
XLOC_008360 CABZ01009247.1 coding downstream 388410 13524874 ~ 13524988 (+)
XLOC_008361 CABZ01056919.1 coding downstream 821258 13957722 ~ 13957850 (+)
XLOC_008362 zgc:162730 coding downstream 848415 13984879 ~ 13986761 (+)
XLOC_008363 BX927244.2 coding downstream 908657 14045121 ~ 14053466 (+)
XLOC_008463 BX663520.1 misc downstream 8115727 21252191 ~ 21252282 (+)
XLOC_008351 NA non-coding upstream 991794 12004803 ~ 12009399 (+)
XLOC_008350 CR848025.2 non-coding upstream 1014559 11982450 ~ 11986634 (+)
XLOC_008368 NA non-coding downstream 1112925 14249389 ~ 14249929 (+)

Expression


Co-expression Network