XLOC_008355 (tmprss4a)


Basic Information

Item Value
gene id XLOC_008355
gene name tmprss4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12429206 ~ 12459335 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016753
AATATTGCATAACACAAGGATATAACAACAAAGAAGCTGGGATACTGggaaatgaaaaaagaaagggagGGTCAGATAAAGACCTTTGATCCTAGAATATATGTTTGCTGTTAAACTAGTTTAACGCATCTATTCAACACATTCTGTCAGTCTTCATCCACATCAGATCCTATTGGAATAAAGATCAGGATTTTACAACAGTAAGACTAAAACCCAGGTTCCTGAGGAAAACACGACACCCTTAAACCCACCAAAGCCAGAGCCTGCAAAACGCACAAAACTCATGACTGCCCCAAAGACTCAGAAGCCTAAAGGGCCGAACAAGAAGAAGATCATCATTACAGTCCTGATGGTGGTGGTCGTTCTGGCAATTTTGGCTGTGGCCGCTTTCCTCATCAAGCAGTTGATCGACAGCAAGTATTTCTTCTGCACAAAATCATGGAAGTTCATCCCGCTGGAGAAGGTGTGCGATGGGAAAAATGACTGTAGTGAAGCCGAAGATGAGTCTGCCTGTGTCACCATGTTTAAACCCAACACCACCTTCCCCTTACGGCTGTACTCTGCCAATAATGTGCTTCAGGTGTTGAGTCCTAGTGATAACACATGGAAAAGTGTGTGTTCAGAGAGTTTCACCCAGCAACATGCTGAGACCGCCTGTCAGCTGCTGGGATATTCAGTTTCTCCAGTTTTCAGCAGCATCGCAGTGGGTCCTTTGCCGTCTGATCTGAAGATATCTTTCTGCATGG
>TCONS_00016754
CTAGGTGAGATGGGCGGAGGTGTACAATTACATAGACTAAAACCCAGGTTCCTGAGGAAAACACGACACCCTTAAACCCACCAAAGCCAGAGCCTGCAAAACGCACAAAACTCATGACTGCCCCAAAGACTCAGAAGCCTAAAGGGCCGAACAAGAAGAAGATCATCATTACAGTCCTGATGGTGGTGGTCGTTCTGGCAATTTTGGCTGTGGCCGCTTTCCTCATCAAGCAGTTGATCGACAGCAAGTATTTCTTCTGCACAAAATCATGGAAGTTCATCCCGCTGGAGAAGGTGTGCGATGGGAAAAATGACTGTAGTGAAGCCGAAGATGAGTCTGCCTGTGTCACCATGTTTAAACCCAACACCACCTTCCCCTTACGGCTGTACTCTGCCAATAATGTGCTTCAGGTGTTGAGTCCTAGTGATAACACATGGAAAAGTGTGTGTTCAGAGAGTTTCACCCAGCAACATGCTGAGACCGCCTGTCAGCTGCTGGGATATTCAGTTTCTCCAGTTTTCAGCAGCATCGCAGTGGGTCCTTTGCCGTCTGATCTGAAGATATCTTTCTGCATGGTGGGCACAACCAAACCACAGACTTTCCAATCCGCTGTGTCAGATCGtaaggtATGCAGTACAGGAACTGTCATCTCATTATCATGCTCTGCAGACTGTGGTTTGTCCAGAAACCAGGACCGGATTGTTGGTGGAAAGGATGCTGACATTGCGAACTGGCCCTGGCAGGTCAGCTTGCAGTATAGCGGCCAGCATACATGCGGAGGATCACTGGTGACTCCAAACTGGGTGGTCACTGCGGCCCACTGTTTCAATGGGGATGGCAGGAAAGCTCTGAGCCGGTGGACCGTCGTCTCAGGAATTACGTATCTGAGTTCTACTCCATCTTCATATGTGAAAGAAATCATCGTTAACAGCAATTACAAACCAGCAGAAAGTGACTTTGACATTACTATGATCAAACTTCAGTCTCCAATCACTTTGTcagAATCACGTAGACCAGTGTGTTTACCTCCTCAAAACCTCGGTCTGAAAGGAGGAGACGGTTTAGTTGTCACCGGCTGGGGTCATATGGCAGAAAAAGGAGGAAGCTTGTCTTCAATGTTGCAGAAGGCTCAGATTCAGGTTATAGACAGTGCCCAGTGCTCCAGTCCAACAGTGTACGGCTCATCCATCACTCCCAGGATGATCTGCGCTGGTGTTATGGCTGGAGGAGTGGATGCTTGCCAGGGTGATAGCGGTGGTCCACTGGTGCATTTGGCTGACCGCTGGGTGCTGGTTGGAGTAGTCAGCTGGGGTGTAGGTTGTGCCAGACCAGGTTTTCCTGGTGTTTACACCAATGTGGACCAGATGCTTGACTGGGCCCATTCAGTAATGCAGACATATAAGTGAGTTTGTGATGGGAACAACTGAGAGGAAAGAATATTTAAGACATACTTCAGGAATTTTGTTAAGGAGTCGCTGGAAGAGTTTTTGGTCCTCATGCTCAGGGTCTTCAAGGTGCCATAAAAAAGATTTTGCACATATatgtacataataaaaacatgtgaACTACCACTTTATTTGGGAACACAGCAATGCAATCTTAAAGTAACAGTACTAACAGTTCTAAGTAACAGTACAGTTTTTGTCTTCTATGATACCTAAAAGgatatgttttgaagaatgtttgctCTGCTCTTCTGCATCCAATGAAAGCTGATGGAAAGCACGCTCTTAAAAATGAAGCCATTTTTGCTTCCCCAAAGTCATTCACTAAATAGTTCTCAGTTTCCTATGaagaactttatttattttcactgtaaAAAGCCTTTTGTTGAATGGAGGGATTCCACGCAAGTTTAAAGGCATTTCATGGAACCACAGACAATAATGAAGCTTTATTTTtgtagaaatattttattttcctttcatTGTATAGCAAAGAGCAGCTTGGACATTCCTGTATTTTCAGCAGGAGGgtgaaaataatgtgtttttgagGTACTGTTACTTTTAATGAGCGACGTCTAATGCACGTTGAAACTACAGCCACAAGAGGGTGCtggtacttgttttttttttattattgtttttttttttaagaacgtTTGTACTTTTACTGTCCTAACGACTTTTATCTGAGTGCCATGTCGTTGTAATCTTGAATTCTTCTGTGTGATATTATAAATGAAATGACAAGTTATGGACTTATTACAGAAGCCAACTCTTGTGTGCACAGGCCAACATTACAGGATGAATGCGACATGGATGTCACACTTTTCCATTTCCAGTTTGGCATTTAGAGTTTTACGTCATTTGGCTTTTGAtatttaaagcttatttaaaCTGTAGGCTACACAAACGCGTCATGTAACTTGTTAACTTATGACTGTTGGTTTTGGATTTTGGATATGAATGGGGCTTGGTTGACATTCGATTAGTGTCATACATCAGTTTTAACTGAATTGACACATTGTTAAATATGTTGCTTTGTAAATAATGTACATACTTGTGTATGCCATGTCtgttttaataaagtaaaatgttGTTAA
>TCONS_00016755
tCGCATCTGGGTCTTTCTCTGGTCAAACTGCTTTGGTCTCTACGGCCAGCAGATTGCAAGAACACATTGATAACACGGACAAAaccatgaggACTAAAACCCAGGTTCCTGAGGAAAACACGACACCCTTAAACCCACCAAAGCCAGAGCCTGCAAAACGCACAAAACTCATGACTGCCCCAAAGACTCAGAAGCCTAAAGGGCCGAACAAGAAGAAGATCATCATTACAGTCCTGATGGTGGTGGTCGTTCTGGCAATTTTGGCTGTGGCCGCTTTCCTCATCAAGCAGTTGATCGACAGCAAGTATTTCTTCTGCACAAAATCATGGAAGTTCATCCCGCTGGAGAAGGTGTGCGATGGGAAAAATGACTGTAGTGAAGCCGAAGATGAGTCTGCCTGTGTCACCATGTTTAAACCCAACACCACCTTCCCCTTACGGCTGTACTCTGCCAATAATGTGCTTCAGGTGTTGAGTCCTAGTGATAACACATGGAAAAGTGTGTGTTCAGAGAGTTTCACCCAGCAACATGCTGAGACCGCCTGTCAGCTGCTGGGATATTCAGTTTCTCCAGTTTTCAGCAGCATCGCAGTGGGTCCTTTGCCGTCTGATCTGAAGATATCTTTCTGCATGGTGGGCACAACCAAACCACAGACTTTCCAATCCGCTGTGTCAGATCGtaaggtATGCAGTACAGGAACTGTCATCTCATTATCATGCTCTGCAGACTGTGGTTTGTCCAGAAACCAGGACCGGATTGTTGGTGGAAAGGATGCTGACATTGCGAACTGGCCCTGGCAGGTCAGCTTGCAGTATAGCGGCCAGCATACATGCGGAGGATCACTGGTGACTCCAAACTGGGTGGTCACTGCGGCCCACTGTTTCAATGGGGATGGCAGGAAAGCTCTGAGCCGGTGGACCGTCGTCT

Function

symbol description
tmprss4a Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human TMPRSS4 (transmembrane serine protease 4).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-631 Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human TMPRSS4 (transmembrane serine protease 4).

Ensembl:

ensembl_id ENSDARG00000103117

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016753 False 746 mRNA 0.45 6 12429206 12451734
TCONS_00016754 False 2548 mRNA 0.43 13 12435975 12459335
TCONS_00016755 True 927 mRNA 0.50 9 12436220 12454729

Neighbor

gene id symbol gene type direction distance location
XLOC_008354 il10ra coding upstream 40772 12377887 ~ 12388434 (+)
XLOC_008353 NA coding upstream 66698 12059240 ~ 12362508 (+)
XLOC_008352 FO904901.1 coding upstream 374460 12030367 ~ 12054746 (+)
XLOC_008351 NA coding upstream 419807 12004803 ~ 12009399 (+)
XLOC_008350 CR848025.2 coding upstream 442572 11982450 ~ 11986634 (+)
XLOC_008356 NA coding downstream 48464 12507799 ~ 12525596 (+)
XLOC_008357 NA coding downstream 160772 12620107 ~ 12621628 (+)
XLOC_008358 NA coding downstream 541858 13001193 ~ 13136464 (+)
XLOC_008359 CABZ01009248.1 coding downstream 962179 13421514 ~ 13509368 (+)
XLOC_008360 CABZ01009247.1 coding downstream 1065539 13524874 ~ 13524988 (+)
XLOC_008463 BX663520.1 misc downstream 8792856 21252191 ~ 21252282 (+)
XLOC_008345 NA non-coding upstream 737746 11683089 ~ 11691460 (+)
XLOC_008343 BX324136.1 non-coding upstream 863697 11565391 ~ 11565509 (+)

Expression


Co-expression Network