RNA id: TCONS_00016753


Basic Information

Item Value
RNA id TCONS_00016753
length 746
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_008355
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12429206 ~ 12459335 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATATTGCATAACACAAGGATATAACAACAAAGAAGCTGGGATACTGggaaatgaaaaaagaaagggagGGTCAGATAAAGACCTTTGATCCTAGAATATATGTTTGCTGTTAAACTAGTTTAACGCATCTATTCAACACATTCTGTCAGTCTTCATCCACATCAGATCCTATTGGAATAAAGATCAGGATTTTACAACAGTAAGACTAAAACCCAGGTTCCTGAGGAAAACACGACACCCTTAAACCCACCAAAGCCAGAGCCTGCAAAACGCACAAAACTCATGACTGCCCCAAAGACTCAGAAGCCTAAAGGGCCGAACAAGAAGAAGATCATCATTACAGTCCTGATGGTGGTGGTCGTTCTGGCAATTTTGGCTGTGGCCGCTTTCCTCATCAAGCAGTTGATCGACAGCAAGTATTTCTTCTGCACAAAATCATGGAAGTTCATCCCGCTGGAGAAGGTGTGCGATGGGAAAAATGACTGTAGTGAAGCCGAAGATGAGTCTGCCTGTGTCACCATGTTTAAACCCAACACCACCTTCCCCTTACGGCTGTACTCTGCCAATAATGTGCTTCAGGTGTTGAGTCCTAGTGATAACACATGGAAAAGTGTGTGTTCAGAGAGTTTCACCCAGCAACATGCTGAGACCGCCTGTCAGCTGCTGGGATATTCAGTTTCTCCAGTTTTCAGCAGCATCGCAGTGGGTCCTTTGCCGTCTGATCTGAAGATATCTTTCTGCATGG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-631 Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human TMPRSS4 (transmembrane serine protease 4).

Ensembl:

ensembl_id ENSDART00000168997

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018900 lncRNA upstream 66698 12059240 ~ 12362508 (+) False XLOC_008353
TCONS_00018902 lncRNA upstream 72197 12060989 ~ 12357009 (+) True XLOC_008353
TCONS_00018899 lncRNA upstream 300770 12059240 ~ 12128436 (+) False XLOC_008353
TCONS_00018898 lncRNA upstream 307768 12059240 ~ 12121438 (+) False XLOC_008353
TCONS_00018897 lncRNA upstream 311476 12059240 ~ 12117730 (+) False XLOC_008353
TCONS_00018903 lncRNA downstream 56065 12507799 ~ 12525596 (+) False XLOC_008356
TCONS_00018904 lncRNA downstream 56112 12507846 ~ 12521524 (+) False XLOC_008356
TCONS_00018905 lncRNA downstream 56112 12507846 ~ 12522794 (+) True XLOC_008356
TCONS_00018906 lncRNA downstream 168373 12620107 ~ 12621628 (+) True XLOC_008357
TCONS_00018907 lncRNA downstream 549459 13001193 ~ 13091234 (+) False XLOC_008358
TCONS_00016752 mRNA upstream 40772 12377887 ~ 12388434 (+) True XLOC_008354
TCONS_00016751 mRNA upstream 374460 12030367 ~ 12054746 (+) True XLOC_008352
TCONS_00016740 mRNA upstream 520124 11883804 ~ 11909082 (+) True XLOC_008349
TCONS_00016739 mRNA upstream 553386 11840311 ~ 11875820 (+) True XLOC_008348
TCONS_00016738 mRNA upstream 558676 11825366 ~ 11870530 (+) False XLOC_008348
TCONS_00016759 mRNA downstream 1533145 13984879 ~ 13986761 (+) True XLOC_008362
TCONS_00016761 mRNA downstream 1657918 14109652 ~ 14120431 (+) True XLOC_008364
TCONS_00016762 mRNA downstream 1689311 14141045 ~ 14147349 (+) False XLOC_008365
TCONS_00016764 mRNA downstream 1693612 14145346 ~ 14173592 (+) False XLOC_008365
TCONS_00016765 mRNA downstream 1702440 14154174 ~ 14163546 (+) True XLOC_008366
TCONS_00016731 other upstream 863697 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 2533220 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 3117728 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 3390042 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 3697340 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016757 other downstream 1073140 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 1505988 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 2942508 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 4067233 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 4378028 16829762 ~ 16829876 (+) True XLOC_008400

Expression Profile

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