XLOC_008369 (si:ch211-11n16.2)


Basic Information

Item Value
gene id XLOC_008369
gene name si:ch211-11n16.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14378829 ~ 14420564 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016769
CAAGAGTTCAGCTGGAAAATCACCTACCGCCAGCACTACTGTAGCAGCAGCAGTAAGTCCTGGGACAGTAGTCTAACTAGCTTAGACGGAGTTGTGATGGTTTTAAATCTTTGGCCATGTCTGAAATGCTGTTGAAAGACATGGATGAGATTTCTCTCGGGCCTGTTAAAATGGACGAGCAGAAGGAAAATGGACGGAGTTTTCTCCTGGTGGACGAAAACGAAAGCTTGCAGGTGAAAAATGAAGCTCATTTTCTGCAGAAGCTGGGCTGCAGTGGCGCTCAGGGAGTGAAAGTGGTTTCCATCTTTGGCAACACGGGCGACGGCAAGTCCCACACTCTCAACCACGTCCTTTTTGACCGCGAGGAGGTTTTTGCCACGTCTCCCTCTCCATCCTCCTGCACTGTGGGTGTCTGGGCTGCTTATGACCCACAGCTGAACCTGATTGTGCTGGACACTGAAGGCCTACTCGGGGCCGCCACTCAGCAGAATCGCCGAATGCGTCTGCTGCTCAAGGTCCTGGCCGTATCAGACGTGGTCATTTACCGCACACGGGCCGAGAGGCTGCACAATGACATGTTCCAGTTCCTCGGCAGTGCATCCGCCGCTTACCTAAAGCACTTCACACCTGAGCTCCGGGCGCTGTCGAGCCGATGTGGGCTAGACGTGCCTCTCTCCAGCCTTGGACCCGCCATCATTGTTTTCCAGGAGACGTCCCGCACTCAGCTGCTGGGCCAGGACGTCTCAGGCCTCGGGCAGGCAGACACGCTGCTGCAGAAGCGCTTTCATGACCTGGGCCAGAGCACAGACGCCTTCAGTTCGGTTCAGTATGTGGGCACACAGACCATCACTCCCCCCACAGACTACTCACAGCTACAGCACACGGTCCAGCAGCAAGTCAGCAACACATCTCAGAGAGCCCCGCGCCAGCCTGCCATTGTGTTCAGTGCACTGCAGGCCCTGAGCGACAGGTTCTGCGGAGAGATCTCAGATGACAAATTCAGCATATGCTCCTTCTTTCCTGATGAATATTTCACTTGCCCATCAGTCTGTCTCAGCTGCAATGTTCGGTGTAAGAACGGCATGAACCACCGGAAAGATGGGGTCCCACACATGGCTGATGGATTATGCCAATATGCCCACCAGTACAACAATAAAGTCCTCATCTGTAAGAAGTGCTATGAGGGCGGAAGGGAAGTGATTGTCATCCCCAAAACATCTGCCTCCACAGACAACCCGTGGTTTGGTCTGGCCAAGTATGCGTGGTCTGGGTACGTTTTAGAGTGTGCAAGCTGTGGCATCATCTACCGCAGCAGACAGTACTGGATGGGCAACCAGGACCCGGAGAGCAGTGTGGTGCGGCCAGAGGTCAAGCACGTCTGGCAGGGGACTGATGCCTTCCAGACTGACCATCAGAATGCTGCTCAGCGGGTTTTGGATGGAATGAACTACATTATTCAGTCAGTGACAGAATACAGTTCAGGGCCGACCAAAGCTGTCGCTGCGTGGCTCACAGACCAGGTGGCTCCACCTTACTGGAAACCCAATGCTGAAATCAGCGAGTGTCACGGCTGTAAGCGAGTGTTTGAGGAGGTGGAGAGGAAGCATCACTGTCGGGCCTGTGGTCAGGGTTTCTGTCAGGCCTGCTCCACTCACAGCATGCCAGTGCCCGAGAGAGGATGGGGCGGCACCCCTGTACGAGTGTGTGATGCCTGTTACCGGCAGGGGGGACCACAGCACTGCGGACAGGTGTCCAGTACTGAACCCCGGACACTAGTGGCCCGCAAAGTGACAGAAGTGGCCCAGTCCACTCTTGACATGGTGTCCACTGCAGTCGACTATCCGCTCTGCTTCATAAAGGGAGTTGCGAGACCGGACTATTGGGTCCCGGACCATGAGATCACCCAGTGCCACTGCTGTGCTAAAGTTTTCACCCCCAGCATGTCTAAACACCACTGCCGGGCATGTGGAGAAGGTGTGTGTGGAAACTGCTCTAGTAAGACCAGAGCTGTGCCATCCCGTGGCTGGGACCATCCAGTGCGAGTTTGTTACACCTGCGCTGAAATCCGGGACTCACTGTGACCCTCCAGCTCCTGTCCCGCTGCTCACATCCAGGTTATGGGAAGTTTACAAGCTTTACACGAAGCTGGAGGAAGATGAAACTCACTGCAGAACATAGACAAACACTCAGGCTAGAAGGATGATCTTTGAATCAAGAGAAAATCTAATAATTATATGTTgcaaaatgacaataatttgTGTTATTGAAATACATTAGATGACAattaagcacattttatacacCCCAAAACCTAGTTCACTATACATGATTTTCTACATACACAGCTATGGAAAAAGTCTGTTTCTCTGGATTAACAGTTTATAGTTATGTgcagggtgcaaattacagggggggTTGGGGGAGATTGACCACCCAATTAATAATGGATCCTCCATGAAGGCCGTCAAAATATGTATGTGGGTCAGTCCTTTAAATACTGAGAAATAGTTTTCTCTGATCTGTATTCtaaataatatttatcattaaaataatagataatataaacgcacatttgaccacccctataacagttcataccattgtgaacaAAATCAGTCTATGCGAGAGAGAAAAATCATTGAAAAGTCGGAAACTGGCAGATCTACAGCACCGATAGACAGTGTTAAAAAGACACTTTTCTTGTAAGATAGCTGTTTGTTTCTACATAcagcctaaaagtaaagtaaaattgcTGCAGAGTTTGTAAAGTTTGACCTGCAGTAACCTCTGAAATAgcaaatatatatagtatactataCATCAGAATACACCAAATATCTCTCAAAACACTGAaatgttaaatatgttttattaataaatgagatgtaattgaaatgaataaatacatttaactgaaggttgttttacacaaacattaCTGAAAAAGATAACACCCCCCGATCATCAGTGTAGAATTCGCACCCTggttatgtgtttgagtaaagaGTTTTGTCTTGTAAAGTACTGATGAGATTTCCTATTAATTACTCATTTGAAACAAAATAGTTgtaattaaaacatgtttgtatACATCTTTAAATGCAGTTTTAGACAACCCAACACACAATTTTAAGTTCAGAAGTTCAAAAATCAATATGTGATGATTTCATATATcaacaaccacaaaaaaaaaaaaaaacattgtttttctggcaaaacagtttttttcctAATAAAATATGCGTGTGTGCGTGCCTGCGTGTGTGTACTAAAAAGTTTACATACCCCTTAAAGAATtggcaaaaatgtaaataatttaaccAAAATAAGAGAGATTATACAAAATGcatgctgtatttttttatttactactgtTTTGAGTAAGATATTGTACTTACATATGGCTCAATAGACAACaattgataaataagggacttttTTATATGGCTCAATAGACAACAATATagctgaaattattaaaataaccccGTGCAAAAGTTTACATTCCTGGTTTTTAGTACCGTTAGTGGTATACTGATGATCTCTGAGTGTTTTTCTGCCTTGAGATGGTTCTTCATGAGTCTCTTGTTTGTTCTGAACAGTTAAACTGACTGCTGTTCTACAGAAAAATCCTCAATCTCCTGCAGATTCTTCAGTTTTCCAGCATCTTTTGCAGATCTAAACCCTTTCCAACATCTTCTGCATGATTGTGAGATTCATATTTTCACTCAGAGGATGATTGAGGGACTCGAACACTACTGTTAAAAAAGGTTTAAACCCTAACTGATGCTCCAGAAGGAAACAGGAGACATTAAAAGGGGTGAAACCCTTTAGGATCTGAAGATCAAGGTAAATTGCACTTAATTTGTGATCATCAGGATATCGCAtcacattttaataatgttaacatTCTTTATGTAAATTATCATACTCAGAACAGTACTAAATAAAACAGCATGCATTTTGTATGATCTttcttattttgttaaaattgttcACATTTTAACTAATTCTTCAAGAGGTGTGTAAACTTTCCAGCACAACTCTAACTTGTATATACAATTCGGAGACAAATGTGCCTTAATGGTCacaaatataatagaatatatatatatatatatatatatatatatatatatatacatatagattcATTCTTCATATATAATAGGAATATTTCAATGCAAAAATAACAATTCATTCTAAAACAATAATGTTTGAAAGAAGATATTTACTTATATACTTAAGAggcaaaaactaattttaatagaTTTTGATAGATCCTAGCTCTAGTGCTGGCACTGAAAAACGAACGCCTTCTAAAAGTGCAtttctgtaaataattttttagataaataataataactctttttttattctaaagaCAGATAAGAAAGCATATTGATCAACGGAGAATAAGAGCAGTAAATATTAACATGCGCAATGCAAAGTAAATTATCATTTGAGATGTTGAAGAGATGCTTGGCGTCTTAAAAATCATATGCATTTATATCTCAAAAATAAAGATGCATTTATATACGTGTAATAAAAGCtttcatttttatcttttattGAGACACTTTATACTTTATTCCAGTAATGGAGCAACAGTAGACGAATAAAACCTAGAAAATTTACATTCCAGTTTGGGTCAGTGCAGTTCATCATGCAATCGGCTCCTATCTCGTTCTATTTGTATTAGTTTTTCTCAAATGCCGACTGCACTTTATCTAATCTTTAACTTTAGCCAAGAGCCATGTAGTCAATTCCGTAAGATGCAAACTGTACATATCTAATGAAAAGGGACTTTAATTCAGCGGTGCCTAATGGATCTCAACCACTGTTATGCATAAAAAAATAGAGGATGATTTCATAATGCAGACTTACACTAAACCCAGTGCTGAAGACTGAGCGCTGAGCTCATGAATAGCTTATATAaggcactttatttttatttgatttaagcaAATCCAAGAGGAATATctcaacttttttaaaaaacatttctgcttctgtttgtgtttttatgtggAATTCAGCATCAGTCTTCAGTGAAGGGATTTAAACCAAAGCAATGGGTTTAATAGCACACAAGCAAACGACAATCTTGGGTCTGTGTACTGATTCATCCAAACATTAAAAAGTCTTTGAAAATGA

Function

symbol description
si:ch211-11n16.2 Predicted to enable GTP binding activity; GTPase activity; and metal ion binding activity.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-77 Predicted to enable GTP binding activity; GTPase activity; and metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000099779

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016769 True 5157 mRNA 0.41 11 14378829 14420564

Neighbor

gene id symbol gene type direction distance location
XLOC_008368 NA coding upstream 128900 14249389 ~ 14249929 (+)
XLOC_008367 si:dkey-243k1.3 coding upstream 172764 14202114 ~ 14206065 (+)
XLOC_008365 si:ch211-116o3.3 coding upstream 205237 14141045 ~ 14173592 (+)
XLOC_008366 clca5.1 coding upstream 215283 14154174 ~ 14163546 (+)
XLOC_008364 clca1 coding upstream 258398 14109652 ~ 14120431 (+)
XLOC_008370 FBXO46 coding downstream 172060 14592624 ~ 14600296 (+)
XLOC_008371 sars2 coding downstream 222077 14642641 ~ 14667095 (+)
XLOC_008372 or130-1 coding downstream 406402 14826966 ~ 14853579 (+)
XLOC_008373 diabloa coding downstream 434102 14854666 ~ 14858189 (+)
XLOC_008374 CR936977.2 coding downstream 440771 14861335 ~ 14964241 (+)
XLOC_008463 BX663520.1 misc downstream 6831627 21252191 ~ 21252282 (+)
XLOC_008363 BX927244.2 non-coding upstream 325363 14045121 ~ 14053466 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 420979 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 non-coding upstream 853841 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 non-coding upstream 869461 13421514 ~ 13509368 (+)
XLOC_008379 NA non-coding downstream 927078 15347642 ~ 15351457 (+)
XLOC_008384 NA non-coding downstream 1030239 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 1208942 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 1358424 15778988 ~ 15782552 (+)
XLOC_008393 NA non-coding downstream 1566490 15987054 ~ 16018789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013513 LOC106580829,LOC106612625,LOC105026889 coding CM030125.1 CM030125.1 33354581 ~ 33366875 (-)