XLOC_008371 (sars2)


Basic Information

Item Value
gene id XLOC_008371
gene name sars2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14642641 ~ 14667095 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016771
ACACGAAATGAACCCTTTCGGCTTCCCTACAGTTCAACTGTCATCCCATCCAGCATGGCGTCCTCTGCAAGGGTAGCTTCACGGGTTTGCTCTTTCTATCTGCTTTTGTCCTCGAGACACGGTGTCAGCAGTGGCTGCAGATGGTCCGGCCGGTCCTGCTCCTCCGCCTCGGTCAAGAGCAGCCTCTACGAGCATGTGCTGGACGGGTACAGTCACAAACCCGAGCTGGACATGAAGCGAGTGTGCGAGGAGGCGGAGGCGCTGACAGCAGAGCTGGAGGACCGCAGAGGAGACCTGAGGCCAGCAGATGTCCCGCTCATAatttcagTCTGGAAGAATCTACAGAAGGTGCAAGAAGAAATATCACATTTAGAAGGCAGAAAGCAAGTGGTCAGTTCTACAGTCCGTGAGCTTGTGggTAAACACGACAAATCCACCTTGTCTAGTCTTGAGGAGTACGGTCACGCTAGAGAAGAGGGCAGAGCGATCCGAGAGAAACTCAATCAGCTGTATCTGCAAGAGAAAGAGCTGGAGAAAGAGCATTACTGCCGTGCTTTAAGACTGCCCAACAGAACTCATCCAAGTGTGCCCATTGGAGATGAGAGCCAGGCAAGAGTGGTTGAAGTAGTTGGTGAGAAACGAGAATTTGATTTTAAACCAAAAGGCCACCTGCAAATTGGAGAGAGTCTTGACATCATAAGACAAAGACGGCTGTCTCACGTGTCAGGACACAGATCTTATTATCTGAGAGGGGCAGGGGCTCAACTGCAGTTTGCCTTGCAGAACTTCGCTATGGATCTTCTTCAGAAACGGGGCTTTATTCCTATGGTTGTTCCTGACATATTAAAATCAGTTGTTTTTGAGGGTTGTGGGATGCAGCCTCATGCTCAGAAATCTCAGGTTTATTCTCTGAATCCCAAACGCTCTCCTGACCTTAATCTTGCTGGTACAGGAGAAGTGGGAGTCGCAGGATATTTCATGGATCATGCTGTAAATTTTAAGGATTTACCTGTCAGGACAGTCTGTAGCAGCACATGCTATCGAGCAGAAACAGACACTGGCAGAGAGACCTGGGGGCTCTACAGAGTTCACCACTTTACCAAGATTGAGATGTTCGGTGTGAGTGCAAATGAGACTGGGGAGGAGAGCTCGCAGTTGCTGGATCAGTTCGTCACGTTACAGAAAGAGATTTTCTCATCTCTACAGCTTCACTACAGGGTCTTGGATATGCCCACTCAAGAACTGGGGCCTCCTGCCTATCGAAAGTTTGATATTGAGGCATGGATGCCAGGCAGAGGCAGCTTTGGAGAGATTTCCAGTGCCTCAAACTGCACAGATTACCAGAGCCGCCGTCTTGATATTCGATATGAGGGAGAAGATGGAAAACTTCAATATGCGCATACAGTGAACGCTACAGCTTGTGCTATTCCACGTACCATCATTGCTATTTTGGAGACATACCAAACCAAGAAAGGAACAGTTCAGGTTCCTGAGGTGTTGCAGCAGTACATCGGCATGGAAGTGATAGAAAAGCCTAAATACACTCCTATAAAGTATATTGGACCAAATCAACCCAAGCGAAAATAACACTTTTATTGGTGTATCAGACTTCAGTGAAGTACTTTGATTTGCTGTGTTTCCAACAGCAAACAGAATGTTTATAGATTTTTGTCTTAATGTATCTCAAACCTCATGCTTAAGGGGAACTTATCTAATTTATGTGGCCTTTTTCAATAAAATGTCATCAGTGA

Function

symbol description
sars2 Predicted to enable serine-tRNA ligase activity and tRNA binding activity. Predicted to be involved in mitochondrial seryl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Orthologous to human SARS2 (seryl-tRNA synthetase 2, mitochondrial).

GO:

id name namespace
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0070158 mitochondrial seryl-tRNA aminoacylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0000049 tRNA binding molecular_function
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1616 Predicted to enable serine-tRNA ligase activity and tRNA binding activity. Predicted to be involved in mitochondrial seryl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Orthologous to human SARS2 (seryl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000102736

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016771 True 1751 mRNA 0.47 16 14642641 14667095

Neighbor

gene id symbol gene type direction distance location
XLOC_008370 FBXO46 coding upstream 42345 14592624 ~ 14600296 (+)
XLOC_008369 si:ch211-11n16.2 coding upstream 222077 14378829 ~ 14420564 (+)
XLOC_008368 NA coding upstream 392712 14249389 ~ 14249929 (+)
XLOC_008367 si:dkey-243k1.3 coding upstream 436576 14202114 ~ 14206065 (+)
XLOC_008365 si:ch211-116o3.3 coding upstream 469049 14141045 ~ 14173592 (+)
XLOC_008372 or130-1 coding downstream 159871 14826966 ~ 14853579 (+)
XLOC_008373 diabloa coding downstream 187571 14854666 ~ 14858189 (+)
XLOC_008374 CR936977.2 coding downstream 194240 14861335 ~ 14964241 (+)
XLOC_008375 si:ch211-149e23.4 coding downstream 506516 15173611 ~ 15218956 (+)
XLOC_008376 med29 coding downstream 565760 15232855 ~ 15237211 (+)
XLOC_008463 BX663520.1 misc downstream 6585096 21252191 ~ 21252282 (+)
XLOC_008363 BX927244.2 non-coding upstream 589175 14045121 ~ 14053466 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 684791 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 non-coding upstream 1117653 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 non-coding upstream 1133273 13421514 ~ 13509368 (+)
XLOC_008379 NA non-coding downstream 680547 15347642 ~ 15351457 (+)
XLOC_008384 NA non-coding downstream 783708 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 962411 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 1111893 15778988 ~ 15782552 (+)
XLOC_008393 NA non-coding downstream 1319959 15987054 ~ 16018789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01744749_01748810 NA coding CI01000308 null 1744749 ~ 1749815 (-)