CI01000310_01638700_01644396 (FNDC4B)


Basic Information

Item Value
gene id CI01000310_01638700_01644396
gene name FNDC4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1638700 ~ 1644598 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_01638700_01644396.mRNA
ACCGCCCTGCTGCTCCTGTCAATGTCTCTGTTACTCACCTGAGGGCGGATTCGGCCACCGTGTCCTGGAATATTCCGGAGGGAGAGACCGTAATTGGCTTTGCCATTTCACAGCAGCGTCAGGATGGCTTGATGCAGCGTTTCATTCGTGAGGTGAACACGACCAGTCATGCTTGTATACTTTGGGATCTGGATGAAGACACAGACTACATTATCCAGGTCCAGTCCGTCGGACTGTATGGAGAGAGTCTGGCCAGCAAAAAGATTCACTTCAGGACACTTAAAAAGTCTGAACATTTTCAATCCACCATGATGGATCAAGATGACCCTGCGGTTGAGGGTTTAGACATTTCTAGACACCTTCAGACTGGAGAGATACTGATCATTATGACTGTACTACTAATGTGGGCAGCTGTGATTGTGCTCTTCTGTAAGCAGTATGATATCATCAAAGACAACGATTCCAACAACCACAGTAAAGAGAAAAGCAAGCCGCTGTCTGGCCAAAGTACTCCAGAGTACCATAACGGAGGCCTGCTGGGCAGCAAGGCATGCCAGGAACGCAGTCAATCACCCCAGCATTACCCCAGCCTGGCGTGTTAGTCGCTGAAAATGTGTCCATTTATTTCGTGATTTTGCAGCGTTGAGTATTGTCACAGGCATGTCTGTTGGAAGTAATGGCCAACCAGGTGTGTTTAAGTTACCGGCTGTAAGTCCTACATGCTGACAAAACTAACCCATTATAACAAAGCGTAGATGCATTGTAAATTAGAGATTTATTGTGCACTTTAGTTAAATTCACTGA

Function

symbol description
fndc4b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FNDC4 (fibronectin type III domain containing 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_01638700_01644396.mRNA True 804 mRNA 0.46 5 1638700 1644598

Neighbor

gene id symbol gene type direction distance location
CI01000310_01588365_01597469 NA coding upstream 41214 1586492 ~ 1597486 (+)
CI01000310_01564875_01571307 TDH coding upstream 66672 1564875 ~ 1572028 (+)
CI01000310_01513690_01517791 NA coding upstream 120471 1513690 ~ 1518229 (+)
CI01000310_01508712_01511125 FAM167A coding upstream 127575 1508341 ~ 1513341 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding upstream 186002 1414325 ~ 1452698 (+)
CI01000310_01663192_01666886 NA coding downstream 18594 1663192 ~ 1667160 (+)
CI01000310_01674884_01675180 NA coding downstream 29646 1674244 ~ 1675265 (+)
CI01000310_01693209_01696414 NA coding downstream 48131 1692729 ~ 1696871 (+)
CI01000310_01723036_01723254 NA coding downstream 78438 1723036 ~ 1723550 (+)
CI01000310_01737635_01745606 CHRNA2A, CHRNA2 coding downstream 93037 1737635 ~ 1745687 (+)
G439723 NA non-coding upstream 33631 1604851 ~ 1605069 (+)
G439721 NA non-coding upstream 34593 1603897 ~ 1604107 (+)
G439704 NA non-coding upstream 76146 1562321 ~ 1562554 (+)
G439679 NA non-coding upstream 114874 1522738 ~ 1523826 (+)
G439657 NA non-coding upstream 228095 1407707 ~ 1410605 (+)
G439741 NA non-coding downstream 6414 1651012 ~ 1651387 (+)
G439697 NA non-coding downstream 26284 1670882 ~ 1673466 (+)
G439759 NA non-coding downstream 116794 1761392 ~ 1770560 (+)
G439776 NA non-coding downstream 129749 1774347 ~ 1778832 (+)
G439764 NA non-coding downstream 174295 1818893 ~ 1819259 (+)
CI01000310_01207513_01226750 CDC5L other upstream 399295 1207057 ~ 1227194 (+)
G439115 NA other upstream 947508 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 989147 648566 ~ 650159 (+)
G439845 NA other downstream 267003 1911601 ~ 1912417 (+)
G440505 NA other downstream 1454819 3099417 ~ 3136328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011209 fndc4b coding NC_007128.7 CM002901.2 5846202 ~ 5928942 (+)