RNA id: CI01000310_01638700_01644396.mRNA


Basic Information

Item Value
RNA id CI01000310_01638700_01644396.mRNA
length 804
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000310_01638700_01644396
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1638700 ~ 1644598 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCGCCCTGCTGCTCCTGTCAATGTCTCTGTTACTCACCTGAGGGCGGATTCGGCCACCGTGTCCTGGAATATTCCGGAGGGAGAGACCGTAATTGGCTTTGCCATTTCACAGCAGCGTCAGGATGGCTTGATGCAGCGTTTCATTCGTGAGGTGAACACGACCAGTCATGCTTGTATACTTTGGGATCTGGATGAAGACACAGACTACATTATCCAGGTCCAGTCCGTCGGACTGTATGGAGAGAGTCTGGCCAGCAAAAAGATTCACTTCAGGACACTTAAAAAGTCTGAACATTTTCAATCCACCATGATGGATCAAGATGACCCTGCGGTTGAGGGTTTAGACATTTCTAGACACCTTCAGACTGGAGAGATACTGATCATTATGACTGTACTACTAATGTGGGCAGCTGTGATTGTGCTCTTCTGTAAGCAGTATGATATCATCAAAGACAACGATTCCAACAACCACAGTAAAGAGAAAAGCAAGCCGCTGTCTGGCCAAAGTACTCCAGAGTACCATAACGGAGGCCTGCTGGGCAGCAAGGCATGCCAGGAACGCAGTCAATCACCCCAGCATTACCCCAGCCTGGCGTGTTAGTCGCTGAAAATGTGTCCATTTATTTCGTGATTTTGCAGCGTTGAGTATTGTCACAGGCATGTCTGTTGGAAGTAATGGCCAACCAGGTGTGTTTAAGTTACCGGCTGTAAGTCCTACATGCTGACAAAACTAACCCATTATAACAAAGCGTAGATGCATTGTAAATTAGAGATTTATTGTGCACTTTAGTTAAATTCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504746 lncRNA upstream 33631 1604851 ~ 1605069 (+) True G439723
TU504744 lncRNA upstream 34593 1603897 ~ 1604107 (+) True G439721
TU504725 lncRNA upstream 76146 1562321 ~ 1562554 (+) True G439704
TU504698 lncRNA upstream 114874 1522738 ~ 1523826 (+) True G439679
TU504671 lncRNA upstream 228095 1407707 ~ 1410605 (+) True G439657
TU504764 lncRNA downstream 6414 1651012 ~ 1651387 (+) True G439741
TU504718 lncRNA downstream 26284 1670882 ~ 1673466 (+) True G439697
TU504797 lncRNA downstream 116794 1761392 ~ 1770560 (+) True G439759
TU504817 lncRNA downstream 129749 1774347 ~ 1778832 (+) True G439776
TU504803 lncRNA downstream 174295 1818893 ~ 1819259 (+) True G439764
CI01000310_01588365_01597469.mRNA mRNA upstream 41214 1586492 ~ 1597486 (+) True CI01000310_01588365_01597469
CI01000310_01564875_01571307.mRNA mRNA upstream 66672 1564875 ~ 1572028 (+) True CI01000310_01564875_01571307
CI01000310_01513690_01517791.mRNA mRNA upstream 120471 1513690 ~ 1518229 (+) True CI01000310_01513690_01517791
CI01000310_01508712_01511125.mRNA mRNA upstream 127575 1508712 ~ 1511125 (+) False CI01000310_01508712_01511125
CI01000310_01414325_01452698.mRNA mRNA upstream 186002 1414325 ~ 1452698 (+) True CI01000310_01414325_01452698
CI01000310_01663192_01666886.mRNA mRNA downstream 18594 1663192 ~ 1667160 (+) True CI01000310_01663192_01666886
CI01000310_01674884_01675180.mRNA mRNA downstream 29646 1674244 ~ 1675265 (+) True CI01000310_01674884_01675180
CI01000310_01693209_01696414.mRNA mRNA downstream 48131 1692729 ~ 1696871 (+) True CI01000310_01693209_01696414
CI01000310_01723036_01723254.mRNA mRNA downstream 78438 1723036 ~ 1723550 (+) True CI01000310_01723036_01723254
CI01000310_01737635_01745606.mRNA mRNA downstream 93037 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
TU504694 other upstream 125359 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 399295 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 947508 651976 ~ 653337 (+) True G439115
TU503981 other upstream 970648 651976 ~ 653356 (+) False G439115
TU504915 other downstream 267003 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1454819 3099417 ~ 3136328 (+) True G440505

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022391 True 696 mRNA 0.46 5 NC_007128.7 5915875 ~ 5917972 (+)