RNA id: TU504718


Basic Information

Item Value
RNA id TU504718
length 2471
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G439697
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1670882 ~ 1673466 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCACTGTAGTCACTTGGACTATTTTAACAATGTCTTTAATTCCTTTCTGGACCTCAAAATATGATGTTGCTGCCTATGTGTGGTTCAGAAACCCTCACCCTCTTAACCCTCTTAATTTGTTCTGAATATGAACAAAGGTCTTACGGGTTTGGGGCGACATGAGGGTGAGTAATCAATGACAGAAATTTAATTTTGGGGTGAACGAACCCTTTAAAATTAACTGATTGGATAAGCTACTTACTACTTACAAAATGAAGTTTTTAGAATGTTATAATAACTTTTTAATTATATAATTATATTTCTACTCATTGTTTGAAATATAATCATTTAAATCGTGTCTTTCATAAAAACATGACAGATACATTAAATATTGATGAACAGGTTAAGCAAAAAATGCTAAGAAAACGCAATGTAGTGCATATTAACAAAATGCTTCATTTTTCCAGCTGACTATCAAGTTTGTGGTCATTGAATGGCTTTGCTGAGGTAAATGACATTACGTGACATTGTTTACAAGGTGTTTTATTGACATCTTTCCATGGTTTAAACCATTTCGCGATTACAGAGAACATTATAAGAATTTTGGTAAGTTGTACTGTTTCTTTCAACATACCTTCTGATGTTCATGTTTATTTCGTGCTGTAACTACTAGTAAAGAGGAAGAGACGATCAGTTTGCGTGTGCTCTGCGCTGCTAAAGAGTGCCAAAGCGGTAATTAATGTTTGAATTTTATAATAAAACTGACGGAATTTGAGAGCTGAGACTTTGTTTCATATCAAAAGTAACAAATCTTATTGCGATTTATTGGATGGGAGCCACTCTACAAAATTTTGTTAATCAACTTAAAACAGCATAGACTAAAAGATTGATTCTTGGGATTATAAGAATCAATATAATTTCGTCAAAATATGAATCGATTAAAATCAAGAAATCGATATTTTTAACCCAGTCCTACCAGATACACAATTGTATTGGACCATCTCAAGCTAAATAAATTTTTGGGACATAATTAGTTTGGAACACTAACAGTAGCAGTTTTACAGTTTTAGTTTAACATTAGGAAAACTACAAAATGCCTCTTAGAGAATATATATCAATACAACAATGACAGTATCATAGATCATTTTTGAGTATGAATTTGTCATTTTGAGTAGAAAATGAACTCCAGATATCACAAAATCGCAAGTTACTAGGCCTAACAACAAAAGCAATGATAAAACAGTGTAAATACAGCTGGAAAATAGCAACAACAAAAAAAAAACGTATTCATTATTCATGCCCCAGTGCATGATGGGAACACCTGAATCAGAAAAGCTGAGTAGGTTTTACTTAATTTATTATTGTTGATGTTTTACGCTTTAATTTCTACAAGCTTGAGTTGAGTACTATTACAGAATTTACTTTGTTTATTAAAATCTTGCCTGAACCAACTTTTTCATGTAGAATTTACTTGACCACAGAATTATTTTCAGTGCATTATGGCAACTAAAATTTAAACAAATACTGAAAGAATATACAAAGAGAAAGAATAAAGACAAATGCTAGCTTTTAGTTTTTATTTTTAATCAAAATGTGCATATATTACAACACAGGACTTGCATAAAAAAAAAAAAAAAAAGTTATTGGATTTTTTTTGTTGATGTATTTAGAAAATGTCTATAATTACATAAAGTAACTTTTGGCTGTTGAACCGTTTTAACATTTACCATTTTTTCCCCTGATCTGAGCTTTTACAGGAAGACCTCACAGAAAACCAGACCACAGCACATATTTTATCATTGATATTAAATATGAATAATAATGCACAACAACAGTGTTTTTGTGATACAGGTTAAAATGTCAGTGCTTTTCATTTCAGATGTTTTTTGCTGTTGCTGGCTGAATTCACGGCGCAGTAGCTGGTTGAAAGGGACCAAACCTCTCTCAAACACCTGACTTGGTTCCGTTTTACCAGCAACTAAGACGTGTTTCTGAAGACAGACGGGTTTTCAGCTTAATTAATTATCATATTTATAGAGGATCATGTCAGCAGAAGACGTCCATCCACGTCATGATGATCCTTCTGGAGGACGGTGACACAAAGAGTGCATGGATGTGCCGGTATGTCCTCATTCTGGGGTGTCCGTCCAGAATTAGCTCTTCTCCACCTGTCCAACTATTTCTAACAGTAAACAGTGGTGATAGGCAGCAGCTGTGTTCTGTCACTCAGGGTCCTTCAGTATTCATGTCATCATGGAGGAACTCAGAAACATCACCATGTGCTCAACAATGACCTATGCTTGACTTTGACATAACCTTTAGAAAGTCATTTGTACCCACATTTGTAAGGTTATTAAGTAGATCCCAGTTCATACTTTAAAACAGATGTCAAACTTTCTAAACCAGGGGTACTTTAAATTAAAATGCTCACAATTCTTGGAAAATATTATAATACCATCCTATAATATTCAGTATTTGTTGCACTATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504764 lncRNA upstream 19495 1651012 ~ 1651387 (+) True G439741
TU504746 lncRNA upstream 65813 1604851 ~ 1605069 (+) True G439723
TU504744 lncRNA upstream 66775 1603897 ~ 1604107 (+) True G439721
TU504725 lncRNA upstream 108328 1562321 ~ 1562554 (+) True G439704
TU504698 lncRNA upstream 147056 1522738 ~ 1523826 (+) True G439679
TU504797 lncRNA downstream 87926 1761392 ~ 1770560 (+) True G439759
TU504817 lncRNA downstream 100881 1774347 ~ 1778832 (+) True G439776
TU504803 lncRNA downstream 145427 1818893 ~ 1819259 (+) True G439764
TU504799 lncRNA downstream 146899 1820365 ~ 1822265 (+) True G439760
TU504832 lncRNA downstream 182336 1855802 ~ 1856200 (+) True G439788
CI01000310_01663192_01666886.mRNA mRNA upstream 3722 1663192 ~ 1667160 (+) True CI01000310_01663192_01666886
CI01000310_01638700_01644396.mRNA mRNA upstream 26284 1638700 ~ 1644598 (+) True CI01000310_01638700_01644396
CI01000310_01588365_01597469.mRNA mRNA upstream 73396 1586492 ~ 1597486 (+) True CI01000310_01588365_01597469
CI01000310_01564875_01571307.mRNA mRNA upstream 98854 1564875 ~ 1572028 (+) True CI01000310_01564875_01571307
CI01000310_01513690_01517791.mRNA mRNA upstream 152653 1513690 ~ 1518229 (+) True CI01000310_01513690_01517791
CI01000310_01674884_01675180.mRNA mRNA downstream 778 1674244 ~ 1675265 (+) True CI01000310_01674884_01675180
CI01000310_01693209_01696414.mRNA mRNA downstream 19263 1692729 ~ 1696871 (+) True CI01000310_01693209_01696414
CI01000310_01723036_01723254.mRNA mRNA downstream 49570 1723036 ~ 1723550 (+) True CI01000310_01723036_01723254
CI01000310_01737635_01745606.mRNA mRNA downstream 64169 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
CI01000310_01814975_01815586.mRNA mRNA downstream 141509 1814975 ~ 1815656 (+) True CI01000310_01814975_01815586
TU504694 other upstream 157541 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 431477 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 979690 651976 ~ 653337 (+) True G439115
TU503981 other upstream 1002830 651976 ~ 653356 (+) False G439115
TU504915 other downstream 238135 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1425951 3099417 ~ 3136328 (+) True G440505

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024818 False 2019 lncRNA 0.37 2 NC_007128.7 5961811 ~ 5973411 (-)