Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU504817 |
| length | 1728 |
| lncRNA type | antisense_over |
| GC content | 0.38 |
| exon number | 4 |
| gene id | G439776 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000310 |
| NCBI id | null |
| chromosome length | 5141163 |
| location | 1774347 ~ 1778832 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU504797 | lncRNA | upstream | 3787 | 1761392 ~ 1770560 (+) | True | G439759 |
| TU504718 | lncRNA | upstream | 100881 | 1670882 ~ 1673466 (+) | True | G439697 |
| TU504764 | lncRNA | upstream | 122960 | 1651012 ~ 1651387 (+) | True | G439741 |
| TU504746 | lncRNA | upstream | 169278 | 1604851 ~ 1605069 (+) | True | G439723 |
| TU504744 | lncRNA | upstream | 170240 | 1603897 ~ 1604107 (+) | True | G439721 |
| TU504803 | lncRNA | downstream | 40061 | 1818893 ~ 1819259 (+) | True | G439764 |
| TU504799 | lncRNA | downstream | 41533 | 1820365 ~ 1822265 (+) | True | G439760 |
| TU504832 | lncRNA | downstream | 76970 | 1855802 ~ 1856200 (+) | True | G439788 |
| TU504836 | lncRNA | downstream | 83006 | 1861838 ~ 1862314 (+) | True | G439790 |
| TU504912 | lncRNA | downstream | 115876 | 1894708 ~ 1896961 (+) | True | G439842 |
| CI01000310_01737635_01745606.mRNA | mRNA | upstream | 28660 | 1737635 ~ 1745687 (+) | True | CI01000310_01737635_01745606 |
| CI01000310_01723036_01723254.mRNA | mRNA | upstream | 50797 | 1723036 ~ 1723550 (+) | True | CI01000310_01723036_01723254 |
| CI01000310_01693209_01696414.mRNA | mRNA | upstream | 77476 | 1692729 ~ 1696871 (+) | True | CI01000310_01693209_01696414 |
| CI01000310_01674884_01675180.mRNA | mRNA | upstream | 99082 | 1674244 ~ 1675265 (+) | True | CI01000310_01674884_01675180 |
| CI01000310_01663192_01666886.mRNA | mRNA | upstream | 107187 | 1663192 ~ 1667160 (+) | True | CI01000310_01663192_01666886 |
| CI01000310_01814975_01815586.mRNA | mRNA | downstream | 36143 | 1814975 ~ 1815656 (+) | True | CI01000310_01814975_01815586 |
| CI01000310_01887698_01893727.mRNA | mRNA | downstream | 108468 | 1887300 ~ 1893840 (+) | True | CI01000310_01887698_01893727 |
| CI01000310_01941915_01945313.mRNA | mRNA | downstream | 163083 | 1941915 ~ 1945642 (+) | True | CI01000310_01941915_01945313 |
| CI01000310_01947567_01956704.mRNA | mRNA | downstream | 168735 | 1947567 ~ 1956760 (+) | True | CI01000310_01947567_01956704 |
| CI01000310_01981356_01982015.mRNA | mRNA | downstream | 202143 | 1980975 ~ 1982224 (+) | True | CI01000310_01981356_01982015 |
| TU504694 | other | upstream | 261006 | 1501886 ~ 1501950 (+) | True | G439675 |
| TU504536 | other | upstream | 534942 | 1222006 ~ 1239405 (+) | True | G439538 |
| TU503984 | other | upstream | 1083155 | 651976 ~ 653337 (+) | True | G439115 |
| TU503981 | other | upstream | 1106295 | 651976 ~ 653356 (+) | False | G439115 |
| TU504915 | other | downstream | 132769 | 1911601 ~ 1912417 (+) | True | G439845 |
| TU505742 | other | downstream | 1320585 | 3099417 ~ 3136328 (+) | True | G440505 |
