RNA id: TU504797


Basic Information

Item Value
RNA id TU504797
length 4382
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G439759
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1761392 ~ 1770560 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGACTTTACAAAAGAGAAAACCTCAGAGGAATATCACTGGAAAAAAGAAGAGAGTTATGACATTAACATTAACATTAACATTAGAAAAGCTTTCCAGCACTGGTGAGACCTAAGCAGGAAGGCCTGAAAACAGATGCAGAGGTTGCGTTTTTTCTGCTCCGTATGGAAGTAACATTGGTTTTGCTATGTTTGACAGAACCGAGATATGCTGTTGTTTTTATGTTAGCTATAGCAACAGGACGGTTTTGAGTATCATTGTTTGTCCGGAGCTGATGTGCTGTTGCCACTTGTTGTCCTCCAGCATTTCCTGTTTCTGCCTCCTTAAAGTTTCCTGCACACGCTGCCTGTCCAGTTCCCACAGCCGCTGGGCGTCTTCCTTACTGCTGGGCTCCGGAAAACCACGGTTCTTCACAAAGACACACCATTAATATGCTAATAGTACTCCAAATGTTGAAATTATAAAGGAAAATGGACCAAATATTTCTTCTTGCACCAGTGTTATTATTAACTAAAACAAAAACTAAAATTAAAATACAAAAAATTTTATTTAATATAATTATTCGATAATTAAAATACAGCTGAAATGAAATTATATAAATATGAGACAAGAAAAACCCCTCGGCAACTAACTGAAATACACGGAGCCCCGCACATGACATGCAGGAAAGAAAAGTAAATCGTGTGCACGCTTTACTAAGTCGTTCCCTCAATTTACTAAATCTTGCGCACGATTTATAAATTAAGGGAACGACTTAGTAAAGCATGCACATGATTTAGCAAATTGAGGGAACGAATTAGTAAATTGTGCGCACGATTTAGTGAATTGAGGGAACGAATTAGTAAATCGTGCGCACGATTTAGTGAACTGAGGGAACGAATTAGTAAATCGTGCGCATTATTTATAAATTGATGGAAGACTTAGTAAATCGTGCACACGATTTAGTATATTGAGGGAACGACTAAGTAAATCGTGCACACACGATTTATAAATTGAGGGAACGACTTAGTAAAGCGTGCACACGATTTAGCAAATTGAGGGAACGAATTAGTAAATCGTGCGCATGATTTAGTATATTGAGGGAACGACTAAATAAATCGTGCACACACAATTTATAAATTGAGGGAATGACTTAGTAAAGCGTGCACACGATTTATAAATTGAGGGAACGACTTAGTAAAGCATGCGCACTATTTATAAATTGAGGGAACGACTTAGTAAAGCGTGCACACGATTTAGTAAATTGAGAATAAGTAAATCGTGCACACACGATTTATAAATTGAGGGAACAACTTAGTAAAGCGTGCACACGATTTAGTAAATCGAAGGAACGAATAAGTAAATCGTGCGCACAATATAGCAAATCAAGGGAATGAATAAGTAAAGCGTGCACACGATTTAGTAAATCGAGGGAACGAATAAGTAAATCGTGCACACACGATTTTTAAATTGAGGGAACGACTTAGTAAAGCGTGCACACGATTTAGTAAATCGAGGGAACGAATAAGTAAATCGTGCGCACAATATAGCAAATCGAGGGAACGAATTAGTAAAGCATGCACACGATTTAGTAAATCGAGGGAACGAATAAGTAAATTGTGCACACAATATAGCAAATCGAGGGAACGAATTAGTAAATCATGCACACGATTTAGTAAATCGAGGGAACGAATAAGTAAATCGTGTGCACAATATAGCAAATCGAGGGAACGAATTAGTAAATCATGCACATGATTTATAAATTGAGGGAACGAATGAGTAAATCGTGCACACGATTTAGTAAATCGAGGGAACGAATAAGTAAATCGTGCACACACGATTTATAAACTGAGGGAACGACTTAGTAAAGTGTGCGCACAATTTATAAATTGAGGGAACGACTTAGTAAAGCGTGCGCACAATATAGCAAATCGAGGAAACGAATTAGTAAATTGTGCGCATGATTTATAAATTGAGGGAACGAATTAGTAAAGCATGCACCCAATTTAGTAAATCGAGGGAACGAACAAGTAAATCGTGCGCACAATATAGCAAATTGAGGGAACGAATTAGTAAATCGTGCGCAGTTTAGTAAATCGAGGGAACAAATAAGTAAATCGTGCACACATGATTTAGTAAATCGAGGGAACGAATAAGTAAATCGTGCACACACGATTTATAATTTGAGGGAACGACTTAGTAAAGCGTGCACACGGTTTAGTAAATCGAGGGAACGAATAAATAAATCGTGCGCACAATATAGCCAATCGAGGGAACGAATTATTAAATCGTGCGCATGATTTATAAATTGAGGGAACAACTTAGTAAAGCATGTGCACAATTTAGCAAATTGAAGGAACAAATTAATAAATCGTGCGCACGATTTAGCAAATCGAGGGAACTAATAAGTAAATCGTACGCACAATTTATAAATCAAGGGAACGACTTAGAGAAGCGTGCGCATGATTTAGCCTGCTATTTTTTTCCTGCATGTCATGTGCGGGGCTCTGTAGAAATAAAATAAGTTGAAGTACTAAAATTACTAAAACTGAAATATAAATTAAAGCTAAATAGTGAAAAATGTAAAACAAAACTAGAAAAATGACAAAAGCACATAACAAAATTAATAAAACAAACTAAAATTAAAACGAAAACTAAAAGATAATTCAAAATATTAATTAAACACTATAATAGTATATAAACAATTCTAAAATAGCTATACCAATTTTTGTCAACAAGCTTTCCTGTAGCTCAAACAGTTCATGGCGCTAGAAACACCAAAGTCATGGAATGACTGATAGAAAACTGATATAAATGTATATACCTTGAATGCAATGTAGTATGTGCCAAATGCTTAAATATAAATGCAAATGTAGTTCAATCAAATGCTGAATAAGAACGTCCCTCCCTCGGAGTTATAAATATCACCTGCTTCCAACTAGCATTAGCACGAACCAAATCATAGTTCATCTGTCTTCTGTTGTGGTAACATTCATACTTTATTTCCTTTCTCGACCATGAATAGGTTGCAAAGGAAGTGGCTGAAATTGATTCATTGCGAAAGTCTCTTTTTTAGTATATGGCACAAGCTGTCAAGCGTGGTTTCACCAGGCTGTGACATAAACTAAGGACTGTTTTCTACATAAAAAAAATAATGATTTGTACCCACCTGAATTTCCTTTTTTAATAGGAAATACATCAACACAGGAAAAAACTGTGTCTATCAAGCAAACTAATGGGGTCTTTTAGGTTATTGGATAGTGTGTGCAAAGCATGTTCATTGGCCTTTTTTAAAGTCTTCTAGCTGTACTGCAAAATATGATTTTATTACTCAGTCTTCTTGTCTTGTTTTCCAGTACAAACACCTAAACATTTACTAATAAGCAAAATGACATATGATTTACATTTCTATGCCTTGTTTTCTGAAAAATGTATCAATATTAAGTGAGTTTAAGCTTAAAAGAAGAAGAAATATCTGCCAATGGGGTCAGAAAAGACAAAAATACAGAGTAACAAAATCATTTTTTGCAGTGAAAAGATCTAGAAATACACAGGAGCAGTATGTTTGTACTACTGAAGGCAGGTGGCGCTCTTACCCCCATACTGCCATGGCGAGGGGACAATGGCAGGGTCAGCGTGCAGCTGGACGTGAGCGTGAAATGCCAGTCTGGCGGGCTGGCAAGGACAGGCGAGCTAATGCGCAGAGACTCGGGCAGCTGGAAAGTGGGCCGTGTGAGCAACAACACACAGACAAGCAAAACTAAACCACACGCTAAAACATATTCACACAATGACATGCATAACACGGCAGTTTAGAGCACAAATGCAGAAAAGCAGACCAAAACCACATGTACTGGAAATGGTGTGACTTGACCTAGATAGACGTGACCAACATAAAGCTGTTTATAGTTTATAGTTATATGGTCTACCAATTTAAACGCATCATCCACAGAATAAAATACAGATATACTGCTCAGGAGTTTCTCTTTTACTGCTCAGGAAATGTAATCGCTCTCAAAGTTATGTTTCATTTCAGTATCAACATTGTCTCAGATGTTTCTCTTAAAATTTCTTTGAAATATATACAAATGAGGCTATAAAATGAACATGGATAGCAGCTCAAATTATTTAATAATTTGATGAGAAAAGTTTGAGTTCATATTGAGATCTCAGACTTGGCAAATATGAGACACTGAGGAGATCTCTTCTGAAACTTTAGAGGAACCTTTCCTCAGGAGAAATGTGTGAGGAGCAAAAGTCTTTCCATTTCATTTATTTCTGTCTATGAGAAAGAAATGAGATATTAAAGAGATATTTTTCCTATGGACCTGCAATTCAAACATTAAATGCAAATCTACTTATAACTATAAAGGGACTGCATTTTGTGCACTTAAAGCAACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504718 lncRNA upstream 87926 1670882 ~ 1673466 (+) True G439697
TU504764 lncRNA upstream 110005 1651012 ~ 1651387 (+) True G439741
TU504746 lncRNA upstream 156323 1604851 ~ 1605069 (+) True G439723
TU504744 lncRNA upstream 157285 1603897 ~ 1604107 (+) True G439721
TU504725 lncRNA upstream 198838 1562321 ~ 1562554 (+) True G439704
TU504817 lncRNA downstream 3787 1774347 ~ 1778832 (+) True G439776
TU504803 lncRNA downstream 48333 1818893 ~ 1819259 (+) True G439764
TU504799 lncRNA downstream 49805 1820365 ~ 1822265 (+) True G439760
TU504832 lncRNA downstream 85242 1855802 ~ 1856200 (+) True G439788
TU504836 lncRNA downstream 91278 1861838 ~ 1862314 (+) True G439790
CI01000310_01737635_01745606.mRNA mRNA upstream 15705 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
CI01000310_01723036_01723254.mRNA mRNA upstream 37842 1723036 ~ 1723550 (+) True CI01000310_01723036_01723254
CI01000310_01693209_01696414.mRNA mRNA upstream 64521 1692729 ~ 1696871 (+) True CI01000310_01693209_01696414
CI01000310_01674884_01675180.mRNA mRNA upstream 86127 1674244 ~ 1675265 (+) True CI01000310_01674884_01675180
CI01000310_01663192_01666886.mRNA mRNA upstream 94232 1663192 ~ 1667160 (+) True CI01000310_01663192_01666886
CI01000310_01814975_01815586.mRNA mRNA downstream 44415 1814975 ~ 1815656 (+) True CI01000310_01814975_01815586
CI01000310_01887698_01893727.mRNA mRNA downstream 116740 1887300 ~ 1893840 (+) True CI01000310_01887698_01893727
CI01000310_01941915_01945313.mRNA mRNA downstream 171355 1941915 ~ 1945642 (+) True CI01000310_01941915_01945313
CI01000310_01947567_01956704.mRNA mRNA downstream 177007 1947567 ~ 1956760 (+) True CI01000310_01947567_01956704
CI01000310_01981356_01982015.mRNA mRNA downstream 210415 1980975 ~ 1982224 (+) True CI01000310_01981356_01982015
TU504694 other upstream 248051 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 521987 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1070200 651976 ~ 653337 (+) True G439115
TU503981 other upstream 1093340 651976 ~ 653356 (+) False G439115
TU504915 other downstream 141041 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1328857 3099417 ~ 3136328 (+) True G440505

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU173018 True 2338 lncRNA 0.42 2 NC_056715.1 1168850 ~ 1171267 (+)