RNA id: CI01000310_01723036_01723254.mRNA



Basic Information


Item Value
RNA id CI01000310_01723036_01723254.mRNA
length 515
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000310_01723036_01723254
representative True

Chromosome Information


Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1723036 ~ 1723550 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCCAGGATCAAAGTCCCGGATGGGAGCCCTTTAAGTGGCCCTCATTATGATGCTGGGTCATTCAGCACCAACCGTACAACTCGGCTCTTTGATCTCCATCGGCGCTGGCTTTTTGATGCCGGCGATAAGCAATGTAAATGTAAACGGATAACCGTGTCACTACAGATGAAGGAAGAATTTTACTCATGCACAAGGTTCCTGTTTGCTAGTGCAACATGAATTATAATGGCTCTTTTGAACCACTTATTAAGATATTGGCAAGATTATGATTATAGGGAAATCTGGGTCTTATCTTCATAAATACACACAGGTGACTAGAACATTATTTTTGAGCCAAGAACCCCTGTTAAAAGATTTATTTCACAAACACACACGCAGAAAAGAAGACAATGCTATCATAAGGCTTACAGGAAATTAGTGCATATACCAAATCACTTTTATGGTGTTTTTTCCTGATCAGAGCTTAACAGACATGATCACTATGAACTGTCTGCTTTGTATCAAACTCTAAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU504718 lncRNA upstream 49570 1670882 ~ 1673466 (+) True G439697
TU504764 lncRNA upstream 71649 1651012 ~ 1651387 (+) True G439741
TU504746 lncRNA upstream 117967 1604851 ~ 1605069 (+) True G439723
TU504744 lncRNA upstream 118929 1603897 ~ 1604107 (+) True G439721
TU504725 lncRNA upstream 160482 1562321 ~ 1562554 (+) True G439704
TU504797 lncRNA downstream 37842 1761392 ~ 1770560 (+) True G439759
TU504817 lncRNA downstream 50797 1774347 ~ 1778832 (+) True G439776
TU504803 lncRNA downstream 95343 1818893 ~ 1819259 (+) True G439764
TU504799 lncRNA downstream 96815 1820365 ~ 1822265 (+) True G439760
TU504832 lncRNA downstream 132252 1855802 ~ 1856200 (+) True G439788
CI01000310_01693209_01696414.mRNA mRNA upstream 26165 1692729 ~ 1696871 (+) True CI01000310_01693209_01696414
CI01000310_01674884_01675180.mRNA mRNA upstream 47771 1674244 ~ 1675265 (+) True CI01000310_01674884_01675180
CI01000310_01663192_01666886.mRNA mRNA upstream 55876 1663192 ~ 1667160 (+) True CI01000310_01663192_01666886
CI01000310_01638700_01644396.mRNA mRNA upstream 78438 1638700 ~ 1644598 (+) True CI01000310_01638700_01644396
CI01000310_01588365_01597469.mRNA mRNA upstream 125550 1586492 ~ 1597486 (+) True CI01000310_01588365_01597469
CI01000310_01737635_01745606.mRNA mRNA downstream 14085 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
CI01000310_01814975_01815586.mRNA mRNA downstream 91425 1814975 ~ 1815656 (+) True CI01000310_01814975_01815586
CI01000310_01887698_01893727.mRNA mRNA downstream 163750 1887300 ~ 1893840 (+) True CI01000310_01887698_01893727
CI01000310_01941915_01945313.mRNA mRNA downstream 218365 1941915 ~ 1945642 (+) True CI01000310_01941915_01945313
CI01000310_01947567_01956704.mRNA mRNA downstream 224017 1947567 ~ 1956760 (+) True CI01000310_01947567_01956704
TU504694 other upstream 209695 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 483631 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1031844 651976 ~ 653337 (+) True G439115
TU503981 other upstream 1054984 651976 ~ 653356 (+) False G439115
TU504915 other downstream 188051 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1375867 3099417 ~ 3136328 (+) True G440505

Expression Profile