RNA id: CI01000310_01814975_01815586.mRNA


Basic Information

Item Value
RNA id CI01000310_01814975_01815586.mRNA
length 597
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000310_01814975_01815586
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1814975 ~ 1815656 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATGCAACAGTGGGCCTTGTTTAGTGGTAACCAATGTTTTAGTGTTTCTAACACAACAGAAAAAACCATGGCTTCGGCACAACCTCCAAACTTCTCCTGGGTGGATCCTGGTAAGGTGGCAGGACTGGCAATGCCACGAATGACAGCCCACTATCAGTTCCTGCTGAACAACGGCATCAAGCATCTAGTGACCCTGAGCGAGCGCAAACCTCCTTACCACGACACCTGTCCAGACCTCACCCTTCATCATATCAGGATTCACGACTTCTGTGCCCCGACATTTGATCAGATCAAGAGATTCTTGTCCATAGTGGAGGAGGCCAATGCGAGAGGACAGGCTGTTGCGGTGCACTGTTTGCATGGTTTTGGCCGGACGGGGACGATGCTCGCCTGCTACCTGGTGAAGAGCAGAAAAATCAGTGGAATCGATGCCATTAATGAGATAAGAACCATACGCCGAGGGTCAATTGAAACAAGAGAGCAGGAACAAATTGTGGTGCAGTTTTATCAACAAAATAAGGTGTAAAATAAGAAAACTTTAAGAAAAATGTTTATGTTTTTGATGCAGATGCTTGCGCACAATGTTATATAAAGCA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504817 lncRNA upstream 36143 1774347 ~ 1778832 (+) True G439776
TU504797 lncRNA upstream 44415 1761392 ~ 1770560 (+) True G439759
TU504718 lncRNA upstream 141509 1670882 ~ 1673466 (+) True G439697
TU504764 lncRNA upstream 163588 1651012 ~ 1651387 (+) True G439741
TU504746 lncRNA upstream 209906 1604851 ~ 1605069 (+) True G439723
TU504803 lncRNA downstream 3237 1818893 ~ 1819259 (+) True G439764
TU504799 lncRNA downstream 4709 1820365 ~ 1822265 (+) True G439760
TU504832 lncRNA downstream 40146 1855802 ~ 1856200 (+) True G439788
TU504836 lncRNA downstream 46182 1861838 ~ 1862314 (+) True G439790
TU504912 lncRNA downstream 79052 1894708 ~ 1896961 (+) True G439842
CI01000310_01737635_01745606.mRNA mRNA upstream 69288 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
CI01000310_01723036_01723254.mRNA mRNA upstream 91425 1723036 ~ 1723550 (+) True CI01000310_01723036_01723254
CI01000310_01693209_01696414.mRNA mRNA upstream 118104 1692729 ~ 1696871 (+) True CI01000310_01693209_01696414
CI01000310_01674884_01675180.mRNA mRNA upstream 139710 1674244 ~ 1675265 (+) True CI01000310_01674884_01675180
CI01000310_01663192_01666886.mRNA mRNA upstream 147815 1663192 ~ 1667160 (+) True CI01000310_01663192_01666886
CI01000310_01887698_01893727.mRNA mRNA downstream 71644 1887300 ~ 1893840 (+) True CI01000310_01887698_01893727
CI01000310_01941915_01945313.mRNA mRNA downstream 126259 1941915 ~ 1945642 (+) True CI01000310_01941915_01945313
CI01000310_01947567_01956704.mRNA mRNA downstream 131911 1947567 ~ 1956760 (+) True CI01000310_01947567_01956704
CI01000310_01981356_01982015.mRNA mRNA downstream 165319 1980975 ~ 1982224 (+) True CI01000310_01981356_01982015
CI01000310_01992187_02003475.mRNA mRNA downstream 175984 1991640 ~ 2003475 (+) True CI01000310_01992187_02003475
TU504694 other upstream 301634 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 575570 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1123783 651976 ~ 653337 (+) True G439115
TU503981 other upstream 1146923 651976 ~ 653356 (+) False G439115
TU504915 other downstream 95945 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1283761 3099417 ~ 3136328 (+) True G440505

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022398 True 789 mRNA 0.47 3 NC_007128.7 6276559 ~ 6282608 (+)