CI01000310_01941915_01945313 (TATDN3)


Basic Information

Item Value
gene id CI01000310_01941915_01945313
gene name TATDN3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1941915 ~ 1945642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_01941915_01945313.mRNA
TTTACGTCTGCTGATCCATGTGGACTGTCGTTTTGAACGATCTGAAAAATATACATCTATGCAAGGTTATATTGACTGTCACTGTCATATTTCTGCCGAGGAATTTGACAATGACATTGATGATGTCATTGGAGAGTCTAAAAAGGCTGGGCTTGTTGCCCTTCTGGCTGTAGCAGAGCATGCTGCTGACACAGTTTCCTTCTTTTCTGCCCCTCAGGATTTAGATGCTGCATTACCGCTGATTGACAAATACAAAGATCACATTGTAGCTATTGGTGAGGTTGGCCTGGATTTCACACCACGTGTAGTTAACAGTGACTCTGGGAAAGACGGTCAGAGACAGGTACTCATTCGACAGGCCGAAATCGCGAAACAGTTGAATCTGCCTCTGAATGTTCACTCAAGATCTGCTGGAAGACCAACCATCCATCTTTTGAAGGAGCTGGGTGTAGAAAATGCACTGCTTCATGCATTTGACGGAAAACCTTCGGTTGCAATGGAGGGTGTAAAAGCTGGTTATTTTTTCTCAATACCTCCATCCATTGTAAGGAGTGATCAGAAGCAGAAGCTGGTGAAGCAGGTTCCTCTGGAGAGCATGTGTTTAGAGACAGACGCTCCTGCATTGGGACCTGAAAAGCAGGTGAGGAATGTACCAAGGAACATCAGCATTAGTGCCGAATATATCGCCAAAATCAAAGGAATTCCCTTGGAGAAGGTCATAGAGGTCACTACCCAGAATGCCCTGCAACTTTTCCCCAAATTAAAAACATTTATCAAAGCTTGACATTAATACTGCACCTCTGCAAAGCTGCATAAAACTGTCCTTTAAACAAACAAATGTGTTTTGTTGTGTAGAAAATGTGATCATGAAAAAAATATGTATTTTTTTTCAGAGGACATTGCTTATTTTCATTTATTTGACTGAAAAGTGTAAAGAGTATTGCAGTGATTAATCAGTTGGGTTTTTTGACTCAGGATGTAGCCTGTTGTTCCCATTTAATGGAATGACTGCAAATGACCACAGCTACCAAAGCAGAAGAAAAGTCTTTTGAGAATGTTTTTTTTCTTTGTTGTGATGTCAAACAAATATTGTATCATTGATTAAAAGCTGTA

Function

symbol description
tatdn3 Predicted to enable endodeoxyribonuclease activity, producing 5'-phosphomonoesters and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human TATDN3 (TatD DNase domain containing 3).

GO: NA

KEGG:

id description
K03424 tatD; TatD DNase family protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_01941915_01945313.mRNA True 1113 mRNA 0.41 9 1941915 1945642

Neighbor

gene id symbol gene type direction distance location
CI01000310_01887698_01893727 CX23, GJE1 coding upstream 48075 1887300 ~ 1893840 (+)
CI01000310_01814975_01815586 DUS23, DUSP23B, DUSP23, TP53I3 coding upstream 126259 1814975 ~ 1815656 (+)
CI01000310_01737635_01745606 CHRNA2A, CHRNA2 coding upstream 196228 1737635 ~ 1745687 (+)
CI01000310_01723036_01723254 NA coding upstream 218365 1723036 ~ 1723550 (+)
CI01000310_01693209_01696414 NA coding upstream 245044 1692729 ~ 1696871 (+)
CI01000310_01947567_01956704 ADCK3 coding downstream 1925 1947567 ~ 1956760 (+)
CI01000310_01981356_01982015 NA coding downstream 35333 1980975 ~ 1982224 (+)
CI01000310_01992187_02003475 SLC5A6B coding downstream 45998 1991640 ~ 2003475 (+)
CI01000310_02017340_02026116 NA coding downstream 71698 2017340 ~ 2026116 (+)
CI01000310_02042995_02059321 SMC6 coding downstream 96240 2041882 ~ 2059325 (+)
G439850 NA non-coding upstream 23107 1918468 ~ 1918808 (+)
G439849 NA non-coding upstream 27489 1914105 ~ 1914426 (+)
G439847 NA non-coding upstream 33883 1907363 ~ 1908032 (+)
G439846 NA non-coding upstream 35528 1905965 ~ 1906387 (+)
G439844 NA non-coding upstream 36735 1904769 ~ 1905180 (+)
G439826 NA non-coding downstream 11513 1957155 ~ 1959063 (+)
G439859 NA non-coding downstream 20028 1965670 ~ 1965988 (+)
G439894 NA non-coding downstream 229088 2174730 ~ 2175039 (+)
G439896 NA non-coding downstream 230649 2176291 ~ 2176580 (+)
G439845 NA other upstream 29498 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 428574 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 702510 1207057 ~ 1227194 (+)
G439115 NA other upstream 1250723 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1292362 648566 ~ 650159 (+)
G440505 NA other downstream 1153775 3099417 ~ 3136328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011218 TATDN3 coding NC_007128.7 CM002901.2 6452511 ~ 6462588 (+)