G439849


Basic Information

Item Value
gene id G439849
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1914105 ~ 1914426 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504919
CTTGAGTCTCTCAATGTTATTCTGATGAACAGTGTTCTGTGATCACCATGGCAACACATGCTAAGTGCTATTTTACAGTGAAACCCAACAATAGGCTTCCATTCAAGTGAGCAAGAAAGACTAGAATCATATGACTACATCATCATGATCAAAACCATTATAACATGTCTAGATAGAATGAACGCATGTCCAAACATGCCCATGCAAGCTCTATTGACCAATACCACCTCGGATTACCAATATTATGCCACAGTTGTTTTACTCATGAATTACTGAAAAACTATTAATAAACCCAAACACAACATCTGCTGGGTCTCCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504919 True 322 lncRNA 0.38 1 1914105 1914426

Neighbor

gene id symbol gene type direction distance location
CI01000310_01887698_01893727 CX23, GJE1 coding upstream 20265 1887300 ~ 1893840 (+)
CI01000310_01814975_01815586 DUS23, DUSP23B, DUSP23, TP53I3 coding upstream 98449 1814975 ~ 1815656 (+)
CI01000310_01737635_01745606 CHRNA2A, CHRNA2 coding upstream 168418 1737635 ~ 1745687 (+)
CI01000310_01723036_01723254 NA coding upstream 190555 1723036 ~ 1723550 (+)
CI01000310_01693209_01696414 NA coding upstream 217234 1692729 ~ 1696871 (+)
CI01000310_01941915_01945313 TATDN3 coding downstream 27489 1941915 ~ 1945642 (+)
CI01000310_01947567_01956704 ADCK3 coding downstream 33141 1947567 ~ 1956760 (+)
CI01000310_01981356_01982015 NA coding downstream 66549 1980975 ~ 1982224 (+)
CI01000310_01992187_02003475 SLC5A6B coding downstream 77214 1991640 ~ 2003475 (+)
CI01000310_02017340_02026116 NA coding downstream 102914 2017340 ~ 2026116 (+)
G439847 NA non-coding upstream 6073 1907363 ~ 1908032 (+)
G439846 NA non-coding upstream 7718 1905965 ~ 1906387 (+)
G439844 NA non-coding upstream 8925 1904769 ~ 1905180 (+)
G439843 NA non-coding upstream 10541 1899366 ~ 1903564 (+)
G439841 NA non-coding upstream 15855 1897560 ~ 1898250 (+)
G439850 NA non-coding downstream 4042 1918468 ~ 1918808 (+)
G439826 NA non-coding downstream 42729 1957155 ~ 1959063 (+)
G439859 NA non-coding downstream 51244 1965670 ~ 1965988 (+)
CI01000310_02042995_02059321 SMC6 non-coding downstream 144344 2041882 ~ 2059325 (+)
G439894 NA non-coding downstream 260304 2174730 ~ 2175039 (+)
G439845 NA other upstream 1688 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 400764 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 674700 1207057 ~ 1227194 (+)
G439115 NA other upstream 1222913 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1264552 648566 ~ 650159 (+)
G440505 NA other downstream 1184991 3099417 ~ 3136328 (+)

Expression


Co-expression Network