G439843


Basic Information

Item Value
gene id G439843
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1899366 ~ 1903564 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504913
GGTCTCCAGGGAGTGGAGGTCACAAGTACTCCAGGCTGATGCATGGTAGCGATTGAATAAATAGCATTCTGCCTCCCCTGTTTGGATCGGAGAAGAGCAAGAACCATCCCAGTGCTAAGATCGGGTGGGTTAGGGTTATGGCATCTCACAAACCATGAGGCATACTCCGAGAAATGTGCGACTGTTTGGGTGCTATTTGGCTTAGTGGAGTTGAGATAGCACCAGCTCACACAAGTAGTAGTGTGAAGACCTGGAAACTTGGAGAACAGTAAAGCACCAGTGATTGCAGAGGGCATCGCACCTATACTAGAACCAAAACGATAACTAGCTATCATGTGTTCAGATGTTGGTTTACACTCCATCATAGCAGCGTCTTGAGGAATTCTGGCAGAAAACTGTAACTTTGGATTACTGTAAATGTTTTGGCTGGCATCATCCATATCTACCACCTCAGTGGGCTCACATGGCTCTGGGGTGCTTTCTGATTGGAAACCTTTCTTGTGACTTTTTTTTTCACCTTCAAGATTTCCTAACTCAACAGCACTAAGCTCTTCAACAATCTGGCCATAAATGTTCTCATCTTTGACTCGCTTTTGCTGTTTTGCTTCAGTGAAGAGTTCGATGCTACTTGCAGGCGAGAGCATGCGCTTGTTTGCTCCACCACTGGGGGCCTCTGTAGTTGAGATGGTTTTGGAGGTTAATGATAGAGGTATGCCTGTATTAAGCTTTGCTGGTGATGCCTGCGGGCTGCGCAGTAGTCGCCTAGGGTGCCCTGATACTGAAGATAGTTCACAACCTACGTTATTTTGTGTCATGACAATGGCAAGACTTTGACAGGAGGATGTTTTGTGTTCTATGCATGATATAGGATTGTTTGTTTGAGAATCCAGAATATGAGATATGCTAGTGTACGTTATGTTTCCATAAGATGGTACTTGCATCTGAATTCTGACAGGAACTAACAAGCTAGATGTGCTTTGACTGGCTAATGCTTGCTGAGCTTGTGAAAGCACTGCTATCGTTGACAAAACATTGCCTAAACTCTGGGAACAATCTTCCTGGGGTTTTCTTAAGTTAATATAAGATTCAGATGCATTGGATTCTTCAGGTTCTTTCTTAATTAGAAGCATTACACTATCCATGTCATGAACATTGCAAACATTTGGTTTAGCATATTGAGATGAGGCTTGCACTGGGCTATATTGTTTGTGTTGTGGAAAAGGACTACCGGAAATCGAAGAGTACGTCATTTTCTCAATGGATCCCTCAGGTGCAAATGGTTTGCTTGGTGAGTTTGTTCTCTTGCTCATTTCATCTGACACTGTGCCACCTTGCGTCTCGGGTTCACCACTTAATGATACCTGCCTAACCAAGAAGGCCCTTCTACGCTCTTTAACTTCCTCCTGCCTAGATGTCAATGAAGGAGAAAGACTGCCATAATCAAAAGACTTGCTTCGAAATTCTGGAACCTCCGAAGGTAATTTATAGGGTGCCTGCTCTGAAGCAGAACGTCTCATCTCTCTGTGATGACTCTGTGAACTTCCTGGCACAGATAAGAACTCCAAAGGCTTATTAAACTCATCTGGGTTGGAATGGGACACAAGGTTAAGGGTCTCCTCTCTGTCGAGGGACTGGGAAAAACTTGAGCTGTGAGACAAATTGCTATCTTGACTCGGGCTTCTGGACAGACTTGTGCAAGCAGATTCAAAACTAGATTCTCCAGAAGAACATTCCATCTCTGCTAATCTCAAGCGTTTCTTTTTGGGTGGTAGTTTCTCCATTGGAAACTGTGACAGAGTTTCACTCCTCTGTGGCCACTGGAACTCTTCAATGGGTTTTTCCTTCTGCTTGACTCCTACATCCAGAACCTTTTCCGGTCTGTCAGGCTCCACAGTTACTCTAATCTCTGGAACTTGGATACTAGGCTGAGATGGTGGCATATGAAGTTTCTGGTGCAGAAAACTGCTGCTTCCCCATTGCCAGTCTACTCCTGTTCTGTGTCCCTCCATGCTATGCTCCTTTTCCATGAATTTGTAAGTGACAATTTTTTCTAAGGGATGTGATCTAACATCACTCTGCTTTTCTGAAGAGTTTAGTCTGTTTAATGAATTTGTGTGCTGAATGACAGAGATAACATTGCTGCCAGCCCTTCTCTCAGTCTCAGAATAGGCAGTATCTAAAGTAGTTTGCTTTATTTCAGGTTCCTCTGAGTGTCCAGAAGGCTTGACTTGGATATGAAAGTCTTCTTCCTCCATGACATTTTTGTCTTTTCTTCGTTTCCTTGTAGAATTTTCAGATAAATAGCTTGGAGAAATGGAGCATAGATCAGTTTCTTGACAGTTTTCTGCACCCATTTTGGAATCATCTATGCTGTGAATTTTCAAGTCTGATTTTAAGCTGCAAGCCAGATGAGCGTAGCAGTCTGATTCTGCATGTCCTTCGTTAGCAGAGTGCTCAAACGCGGCTTGCCGCATGAGTCTCCTCATACCCATTGCACCCCGGTATGTGACATCAGCACCTGTCATTCTCTCATCAAATGAATTACTGCTTCTTAGCCCTTCTGGAGAATTTAGATTCGAATTGGATGAGGTTGGAAGAGAATTACTGCGCAAGAATACACTACTGTCTGATGCCGTTTCCAGAAAGTCAGAGCTAGGGTTTTGACATTCTTGGTAATCTTCCTCTTGGAAGGACTCTGAATCAATTTTTATTGATCGAACTAGGTCTTTTTTGCTTCTGTGAATGGAGGAGTCTGTGTCACCAGGCATCATGCCTTTGTTCAGTGTAATCATGAAGCTAGATGTGGCTTCATTTATGTCTGTCATGCACGTTTGTACAGTGATTGATTGCTTTGGCCTGGTCGTTGGTTTATAACATTTCCCAAACATAATTTCTTGATACGATTTGGCACTTGCACTCGACTGGTTGAACTGTTGCTCGGCACTCTCAGAGCGTGAGAAGTATCCTGAATCAGTGCTGCCTTTACTGTATGAACTGGGCAGGGAAAGAGACTGATCAGAGTCTTGACTTTTCTTCTCCGAAAGCCGAAGTGCCAGTCTTTGCTTGATGGAGGAGAATTCAACCATTTGCTCTACCTGAGCAATAGCCGCAGGTGCCGTCATTTCCCTGAACTGCCATAAAGATACTTTTCCTGATGACCCTGTTTCCTGTTTGACTGAAGTCTGAGCAGAGCACATTGCTTCCTTTTTTGCCAGTTTCCCTCCTTTTTCTTGCACGAAACCCCCTGTGTCTTTGATATGGCTTGTTGTATCCAAGGACAAGTCCTCCACAACTTCTTCATCTGTGTCACTGCTCTGCTCAGCATCAAAACGCATCTCACCCTCTGCCACAGTCAACTCCTCATCCATTTTCTTGCTGTCTTGTTCTGAAAATGAAACCAATCCTGCTTTCACTGCATGGGTGTGAGATTTTCTGTGTTTGTACAGGTTGCTCTTAGTTTTAAATGAGAAACCGCAAGGAATACACGGATATGGTCGTTCGCCAGTATGAGAACGGATGTGCTTCTTTAGTACGCTGGGTTTGGCACAAGCTCTCCCACAATACTGGCATACATACTTCCCAGTTTTAACAGATTTCTGCTCCTTTTTGTGAAGGCCCTCTGACAGCAGCTCATATTCCGACTGAAGATATCGTTTGTTTGGTAGAGGAACGTTCTTCCTCCTGAGCTGGATGTGACACTGTTCTCGAGATTTTGAGGTAAGAATATTTCCTGAAGCAAGGACCTGTGACTCCATACTAGGAGATGGACTTACAGCTGGGGTCTGGGGTTGCTCCACAAGTCTTATTTTGTCCTCTGAGCCAGAGGATTGGCCTCTTTGGGTCATCTCAGATGGCAAGTGTTTTTCATCATCTTTGAAACTGATAATCTGTTCGGAACATTCCGCTTCACCTGAGGTTTTAGCAGCCTCCATAATAAGGATTTGCTAACTACAGTTGCTACATTGCCCTTGGTTTTGTGACAACGATCATGGTCTTGTTTCGATTAAAGTTTCTCTCTTAACTTGGAAGTTTAATCCTTCACGTGCTTTAAACAGTTCCCTATGATTGTATAGCAGTCAGTCCAACAGCATCATTTTCAAAAATGATGAAATAATCCTTTTTTCATATGTTCAAGAGTATGGTTCAGTCAAGTTGTTTAAAAATGGTCTCCATCTCTATATACATATAGTCCTGGGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504913 True 4199 lncRNA 0.44 1 1899366 1903564

Neighbor

gene id symbol gene type direction distance location
CI01000310_01887698_01893727 CX23, GJE1 coding upstream 5526 1887300 ~ 1893840 (+)
CI01000310_01814975_01815586 DUS23, DUSP23B, DUSP23, TP53I3 coding upstream 83710 1814975 ~ 1815656 (+)
CI01000310_01737635_01745606 CHRNA2A, CHRNA2 coding upstream 153679 1737635 ~ 1745687 (+)
CI01000310_01723036_01723254 NA coding upstream 175816 1723036 ~ 1723550 (+)
CI01000310_01693209_01696414 NA coding upstream 202495 1692729 ~ 1696871 (+)
CI01000310_01941915_01945313 TATDN3 coding downstream 38351 1941915 ~ 1945642 (+)
CI01000310_01947567_01956704 ADCK3 coding downstream 44003 1947567 ~ 1956760 (+)
CI01000310_01981356_01982015 NA coding downstream 77411 1980975 ~ 1982224 (+)
CI01000310_01992187_02003475 SLC5A6B coding downstream 88076 1991640 ~ 2003475 (+)
CI01000310_02017340_02026116 NA coding downstream 113776 2017340 ~ 2026116 (+)
G439841 NA non-coding upstream 1116 1897560 ~ 1898250 (+)
G439842 NA non-coding upstream 2405 1894708 ~ 1896961 (+)
G439790 NA non-coding upstream 37052 1861838 ~ 1862314 (+)
G439788 NA non-coding upstream 43166 1855802 ~ 1856200 (+)
G439760 NA non-coding upstream 77101 1820365 ~ 1822265 (+)
G439844 NA non-coding downstream 1205 1904769 ~ 1905180 (+)
G439846 NA non-coding downstream 2401 1905965 ~ 1906387 (+)
G439847 NA non-coding downstream 3799 1907363 ~ 1908032 (+)
G439849 NA non-coding downstream 10541 1914105 ~ 1914426 (+)
G439850 NA non-coding downstream 14904 1918468 ~ 1918808 (+)
CI01000310_01508712_01511125 FAM167A other upstream 386025 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 659961 1207057 ~ 1227194 (+)
G439115 NA other upstream 1208174 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1249813 648566 ~ 650159 (+)
G439845 NA other downstream 8037 1911601 ~ 1912417 (+)
G440505 NA other downstream 1195853 3099417 ~ 3136328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011875 hivep2b coding NC_007128.7 CM002901.2 6393719 ~ 6399920 (-)