G439842


Basic Information

Item Value
gene id G439842
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1894708 ~ 1896961 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU504912
TAACAGTTGTAACTTCTAAAATGCCATAAATTCAAACTAGATACCTCAAAATCTTTAATATGTAATACTGTAAACATGACATGAAAGTTCCTTCAGTATAAACTCAGTTTAACTTTACCATCTCAGCATTTTTAAATACTCAAACTATTAATATAAATACCATAAACTGACTTCTACTTCATATGATATCAATATGTTTAATATGAGATAGCACTTCTTTAAAGACATTTAAAATGACTTAGGCTAAAAATTCATACATTCAAACAGTCAGACAAGTTCACCAGACAAAACCCCCTTCATCTGATGACAAGAAAACCCTGAAAAAGCAACTATCCCTTCAAATATACCATTTCATTTTTGTTTACTTCTACACAAGACACTCTTCAAAAGTAATTACAGTACATGATAGCGATTATGTGTGTGTGTTTGTGTAAATATGTATGTGTGTGTATGAACACGCAAGTATGTGTGCTTGTATGTGAACATATAACTGACTTAACAGTGACTGGAATGTTGTGTCATATGATTAATTCAATGAAAAAAAAAAATCATCTAAAATGATTCAAAAGAGCTCCAATATTGATGACACGGCATTCAGTCTATCAGCTCGCTAGAAAGTGCTTCAAATAGTCATCTTAATGCACAATACTTACCACTTTTTATATTATGATATGATGTCATACGCAGATCTATATTAAAAATGCCTTGTAATGACATTTCTTTGCTTAAGTGCAGAAAAATCTAAAGTTAAAAGGAAACGAGGTATGATACATTTAGAAAAATACTATACGGTGGAGAAGGTTTAAACAAAAGGGCTGTTTAAAGAATTTATAATCAACACTTTTAGGTTCATAATCTTGAACACACATAATGCAGTTAAGTTATAAAGGTGCCAGCAAAAATATACAACAGCATACAAGGCAATGTCGTAGCACAGCTTAATGCAATATGCAAACGTTAACATACGTAATAAGTGCAATCTCAAAAAGCAACCACAATACCTCATATTAGTTAACCTTAATGACCACCACTATTGTTAAGTGCATAAACAGGGTACATCAAATGACTTTCTCTCTTTGAGGGATATGCAAACATCTTCTGAAAAGGCACAAGCAGAAGTCAATGAAGACGATGTCAGTAAGAATTGCGATCAGTATTATACTTGGGACTTGATGCACTTCCAGTAGGAATTGTTTGAATTGTCCTGTGAAACGCATATTTGCAATTTAAATAGTTTTAATGAAATATTGATCTAATATTTTTGCATGTATTGTTGTAAATACGAAGCTTATACACATAGTTAAAAGTGGTATGGCAGGTAAAGAGAATATGGCATGTGCATTGAAATGAACAAAAAATGCGACATGTTCTGCATATTCTATGTATTATTTGTTTCTGCCTACGTTACCAAAACTCCAAAGAACCTTGGTCAGACTCTAAGGCCAAAAACACACTCTAAGCAAGTTTGATTTTGTGCATATTTACCTTCCAAAATGTGACACAATTTATAATGCTGCAAGGGGGCGCTCTGGGTCATTGTTCTCTTTCAGGTCAACTATTGAGAATTTTACTGAGCAAGTTAGTTAAAATTTGTTAAACTTGGCTTGTTTACAGCAGCTACCTGAATAATAACACATCCAGTTTAATGGCACAGACACTTAAAGGTAACTCTATCGCCCTCTTGAGTATAGAAGTTTGTTACCGCCAGTGCAACACAAGAACGCACGTAAAGTATGTTCAGCACAACCATTCACTGAATACTTGCATAAAGTATGTTTCTGGTCTGAGCTTGGATTTCATTTTACTTTTAAATGCGATTATACAATGCTTACAAAGTCAGCTTTTAGGTGGTTTATCTGTGGCATCTTCAGATGTGATTCTGAGGGATGCAATAGCTTTTGCACAGATGTAGACGCTCTCCTCCTTCTTATCATCTTTGCTTTGAAGGCCAGAGGATGCGGTTGCTATTTCTCCACTGTACGCTACTCCAGGATCTAGGACAGGGGCTGAGGTCCGGCCAGAACTAGCCGTTTCTAATATATTCCCCTGTGGAATTGATGGGAGTGAATTTCTCTCCCCAGCAGCACCAGATATTGACGTGGAGGGCATTCTTAACCCCCCAATAGGGATCATCGGAACAGGTGTTGGCACCTGTCCTTGAGAGTGCAAAGGCAAATGGCTGAAGATGTCTGGCTGCAGGTTTGTGGACAGATTCTTACTGCTGCATAGGCCAACAGGAACATATAGATTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU504912 True 2254 lncRNA 0.36 1 1894708 1896961

Neighbor

gene id symbol gene type direction distance location
CI01000310_01887698_01893727 CX23, GJE1 coding upstream 868 1887300 ~ 1893840 (+)
CI01000310_01814975_01815586 DUS23, DUSP23B, DUSP23, TP53I3 coding upstream 79052 1814975 ~ 1815656 (+)
CI01000310_01737635_01745606 CHRNA2A, CHRNA2 coding upstream 149021 1737635 ~ 1745687 (+)
CI01000310_01723036_01723254 NA coding upstream 171158 1723036 ~ 1723550 (+)
CI01000310_01693209_01696414 NA coding upstream 197837 1692729 ~ 1696871 (+)
CI01000310_01941915_01945313 TATDN3 coding downstream 44954 1941915 ~ 1945642 (+)
CI01000310_01947567_01956704 ADCK3 coding downstream 50606 1947567 ~ 1956760 (+)
CI01000310_01981356_01982015 NA coding downstream 84014 1980975 ~ 1982224 (+)
CI01000310_01992187_02003475 SLC5A6B coding downstream 94679 1991640 ~ 2003475 (+)
CI01000310_02017340_02026116 NA coding downstream 120379 2017340 ~ 2026116 (+)
G439790 NA non-coding upstream 32394 1861838 ~ 1862314 (+)
G439788 NA non-coding upstream 38508 1855802 ~ 1856200 (+)
G439760 NA non-coding upstream 72443 1820365 ~ 1822265 (+)
G439764 NA non-coding upstream 75449 1818893 ~ 1819259 (+)
G439776 NA non-coding upstream 115876 1774347 ~ 1778832 (+)
G439841 NA non-coding downstream 599 1897560 ~ 1898250 (+)
G439843 NA non-coding downstream 2405 1899366 ~ 1903564 (+)
G439844 NA non-coding downstream 7808 1904769 ~ 1905180 (+)
G439846 NA non-coding downstream 9004 1905965 ~ 1906387 (+)
G439847 NA non-coding downstream 10402 1907363 ~ 1908032 (+)
CI01000310_01508712_01511125 FAM167A other upstream 381367 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 655303 1207057 ~ 1227194 (+)
G439115 NA other upstream 1203516 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1245155 648566 ~ 650159 (+)
G439845 NA other downstream 14640 1911601 ~ 1912417 (+)
G440505 NA other downstream 1202456 3099417 ~ 3136328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location