CI01000310_01992187_02003475 (SLC5A6B)


Basic Information

Item Value
gene id CI01000310_01992187_02003475
gene name SLC5A6B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1991640 ~ 2003475 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_01992187_02003475.mRNA
ATATAAATACGAATACTTTGCAATTTTGTACAGGATTACAAAACACATTGGAAATCATGCCAATTAGTGCAGAAAATGAATTTGAATAAATTTAGAGTAATTTCAAAGACATTTCCAAAACAGAAGTAATGACCGAACGGTCGAACCACATGATATTTTGACACTTTAAATAACAGAAAATTACAGATAACTAATGTTTTTTTGAAAAGTTAAAGTGGGTCCATGCACGGGAGAGGTACTACATATCTTTTTATGCATTTAAACCAAATTTTAACTGAAAAAAATGCAATCAGACAGAAAATGTAGGCGTCATGTCATTGACCCAAGTATGAAATGTTCACCATAAGATCTAATAACATGCATTTGAAAAATAGATGGCGACTTTAAATGTCAACACATTAGCATAACATGAAATCATGACCTGAATCTTCTATCAGTGTGTTTCATGTTTCAGGTCGTCTTCAGATTTGTAGGCCGATGGCTTTGACCTTTGTCCTGATCACGCAGCGGAGACTCTAATATCATGCTTCATGCCTGCAATCTCAGCATGGATCCGTCTGGGCCTAAGTACTTCACTATTATTGATTATGTGATATTTGCGTTGTTGTTGGTGGCCTCCATGTCCATCGGGCTGTACTACGCCTTCACCGGAGGACGCCAGAGCACCACGCAAGAGTTTCTGTTCGCAGACAGGAGTATGAAGTGCCTGCCGCTCTCTTTGTCTCTCATGGCTACCTTCCAGTCGGCTGTGGCCGTCATTGGCACGCCGGCTGAAGTCTATGCCAATGGCACGCAGTACTGGTTCATTGGCTGCTCTTATATTCTGGGTCTCCTGATACCAGCACACATTTTTATTCCTGTGTTCTACAGACTGCATCTCACCAGTGTTTACCAGTATTTGGAGCTGCGCTTCTGTAAAGCCGTCCGTATATGTGGCACTGTTACATTTATTTTTCAGATGGTCATTTATGTGGGTGTTGGGATCTATACACCTGCTCTTGCACTGAATGCAGTTACTGGTTTTCATTTATGGGGAGCAGTACTGGCAACTGGGTTGGTCTGTACTGTATATACGGCACTGGGTGGGCTAAAGGCAGTGGTCTGGACCGATGTTTTCCAGACAGTAGTCATGTTTACTGGTCAGCTAGCCGTCATCATTGTGGGCGTTCAGCAGGCTGGTGGTCCATCTGAAGTCTGGGTCAAAGTCAGGGACGGTGGACGCATCTCTGGCTTCGACCTGAATCCTGACCCAACGGTGAGACACACGTTCTGGACGTTAGGTGTTGGAGGAGTGTTCCTCATGCTGTCTCTTTATGGAGTGAACCAGGCTCAGGTTCAGAGGTACCTCAGTTCTCGTACGGAGAAAGAAGCCGTCATGTCCTGCTATATGGTGTTTCCATGTCTTCAGGTGGCTTTAATGCTCAGTTGTCTCATGGGGCTGGTCATGTACGCTTGCTACGGAAACAACAGCCCTTTAGAACAGCAGTACATCAAATCCAAAGACCAGATGGTGCTCTACTTTGTCATGGACATGTTACAAAACTTCCCTGGACTTCCTGGATTGTTTGTGGCGTGTTTGTTTAGCGCATCTCTCAGTACAATATCCTCAGCGTTTAACTCACTGGCCACGGTGACCATGGAAGATCTGATAAAACCCCATTACTCAATGACGGAGGCCAGAGCCACTCTGCTGTCAAAGATGCTGGCCCTATCATATGGGATTATATGTCTGGCTATGGCTTATGTCGTCCATTTGATGAACAGTTCAGTTCTTCAGGCTGCTCTCAGTATCTTCGGGATGGTCGGTGGGCCACTGCTCGGTCTGTTCTGTCTCGGCATCTTTTTCCCATGTGCCAATAGCATTGGAGCTGTAATAGGTCTTGCTGCAGGTCTGCTCATGGCTTTCTGGGTTGGCATTGGTGGTTTTTTGGCTCGGATGTCCAGTTCTGTAGTTCCTCCATTCAACTCTACCAACACAGTAGCAGCCACCCCTGACAACATCACCATCACAGCCGTGACTGCAGTCATAGATGCTGCCAGCAGACCCGTGGGGCTGGATGGCTTCTACTCTCTGTCGTACATGTGGTACAGTGCTCTCAACTCCTCCACTGTGGTGCTTATAGGACTCATTATCAGCTTCATGACAGGCCCAACAAAAGGAGATGATGTGGCGTCTGGCACAGTGTATCCAGTGGTGAGAACTGCACGATCCCTTCTGTACAAGCTTGTGCAGCCAAGTGCTTGCTGCACGTCCCCTCCTGAACAAAAG

Function

symbol description
slc5a6b Predicted to enable sodium-dependent multivitamin transmembrane transporter activity. Predicted to be involved in biotin transport; pantothenate transmembrane transport; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A6 (solute carrier family 5 member 6).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_01992187_02003475.mRNA True 2269 mRNA 0.46 14 1991640 2003475

Neighbor

gene id symbol gene type direction distance location
CI01000310_01981356_01982015 NA coding upstream 9416 1980975 ~ 1982224 (+)
CI01000310_01947567_01956704 ADCK3 coding upstream 34880 1947567 ~ 1956760 (+)
CI01000310_01941915_01945313 TATDN3 coding upstream 45998 1941915 ~ 1945642 (+)
CI01000310_01887698_01893727 CX23, GJE1 coding upstream 97800 1887300 ~ 1893840 (+)
CI01000310_01814975_01815586 DUS23, DUSP23B, DUSP23, TP53I3 coding upstream 175984 1814975 ~ 1815656 (+)
CI01000310_02017340_02026116 NA coding downstream 13865 2017340 ~ 2026116 (+)
CI01000310_02042995_02059321 SMC6 coding downstream 38407 2041882 ~ 2059325 (+)
CI01000310_02087211_02095576 LACE1A, LACE1 coding downstream 83736 2087211 ~ 2095929 (+)
CI01000310_02098738_02105250 FOXO3, FOXO3A coding downstream 95074 2098549 ~ 2105571 (+)
CI01000310_02115219_02147202 NA coding downstream 111744 2115219 ~ 2147308 (+)
G439859 NA non-coding upstream 25652 1965670 ~ 1965988 (+)
G439826 NA non-coding upstream 32577 1957155 ~ 1959063 (+)
G439850 NA non-coding upstream 72832 1918468 ~ 1918808 (+)
G439849 NA non-coding upstream 77214 1914105 ~ 1914426 (+)
G439847 NA non-coding upstream 83608 1907363 ~ 1908032 (+)
G439894 NA non-coding downstream 171255 2174730 ~ 2175039 (+)
G439896 NA non-coding downstream 172816 2176291 ~ 2176580 (+)
G439924 NA non-coding downstream 245802 2249277 ~ 2292491 (+)
G439936 NA non-coding downstream 304540 2308015 ~ 2308268 (+)
G439845 NA other upstream 79223 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 478299 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 752235 1207057 ~ 1227194 (+)
G439115 NA other upstream 1300448 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 1342087 648566 ~ 650159 (+)
G440505 NA other downstream 1095942 3099417 ~ 3136328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location