RNA id: CI01000310_01981356_01982015.mRNA



Basic Information


Item Value
RNA id CI01000310_01981356_01982015.mRNA
length 1250
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000310_01981356_01982015
representative True

Chromosome Information


Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1980975 ~ 1982224 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATAAAAGCCTGAATTTGGTCTGAAGAGTCCAATCTTTCAGTCTTACCTTGTCATTATCAACACAATAGTGATCATGTGACTGAGTGACTTTGAAACTCAAAACTCTGAAACCTGACAGAACGAAAGACATGTTATGTTTAAGTGTCATAGCAGCAGATTCTTACGAGACTAGGAAACATATGCAGCAGTTTCAGGTACAGTAAATTTGCATTTATTATGTATACATGTATACAATGCTCACATACACATTTTCATAAAATAAATTAGCCTTGAAACAGTCGTTGTGGTCTAAAATTCTGAAGCTTCTGACACATTTGTGTGTGTTTGTAAAATAAATTTAACCTTGGAACAATCTGCGTCTGTGTGCTTAACCAAAAAAATGGTTGGTTCCATTTACAGTATCCGCTTTAAGAAACATCTCAAAATGACAACACATCCAAGCATTAGGAAACCCAAGTCTTTCATTCACATGGACGTAAGACTGCTGAACCACAAAGAGGACGTCCATCTTAAGTGGAAACTACACAACATCAGCACCAAACACAGACTCAACCTCAGACTGCTGGAGCAGGAACGACAGTTAGTGCTGAAAGAGCACAAGCGGCTGCTGCAATTAAAGGTTTGCGAACCGTACGCAACAATAAACAACACGATGAGAGCCATATCTGAGGTCAGGATGGCAAACGATGCACACGAGACCCGATTCTCAAAATCTGCCCCAGCATTCAGAGCTCTATCCTCAGCAAAAGCCTTTGAGGATGACAACCAACAGAGGTTTGCTAAATCAGCATCATTTTCTGTCAAGAAAGATGATTCATCTCCACCTATGATATCCACAGAAAAATTCAAATCTTCGGAGAATGGTCAGCTATCTATTCTAAAGCTGAAAGACCTGGCGTTGATCGACAGCATCTCCCAGAAAGAGCTGATGTATCAGGAAGAATATTACCGATGGTACAAAGAAAGACTGAAACAACTGCAGAGAGAAAAACTACGACAGAAAATAAAGCGCTTTCTCAGCACTTTAGAACATATTTGACAATGTATGCTTGTGCATGTGGTTGTCAGATGAAATTTGTGTGTCATTAAGGGAATTTTGAACTGATATATCGTGCTAAATAGTTGTTTGTTTCCTTCTCTGCATGCTAATCTACCTCTGAATGTAAAAGCTCTGTGGCATCTCTGTTATATGAGCCCATTGATAGAGCGGTGGGGTTTTTAACTCACTATAATAGGATATTATTTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU504929 lncRNA upstream 14987 1965670 ~ 1965988 (+) True G439859
TU504896 lncRNA upstream 21912 1957155 ~ 1959063 (+) True G439826
TU504920 lncRNA upstream 62167 1918468 ~ 1918808 (+) True G439850
TU504919 lncRNA upstream 66549 1914105 ~ 1914426 (+) True G439849
TU504917 lncRNA upstream 72943 1907363 ~ 1908032 (+) True G439847
TU504855 lncRNA downstream 76546 2062563 ~ 2075101 (+) True G439795
TU504969 lncRNA downstream 192506 2174730 ~ 2175039 (+) True G439894
TU504971 lncRNA downstream 194067 2176291 ~ 2176580 (+) True G439896
TU504999 lncRNA downstream 267053 2249277 ~ 2292491 (+) True G439924
TU505012 lncRNA downstream 325791 2308015 ~ 2308268 (+) True G439936
CI01000310_01947567_01956704.mRNA mRNA upstream 24215 1947567 ~ 1956760 (+) True CI01000310_01947567_01956704
CI01000310_01941915_01945313.mRNA mRNA upstream 35333 1941915 ~ 1945642 (+) True CI01000310_01941915_01945313
CI01000310_01887698_01893727.mRNA mRNA upstream 87135 1887300 ~ 1893840 (+) True CI01000310_01887698_01893727
CI01000310_01814975_01815586.mRNA mRNA upstream 165319 1814975 ~ 1815656 (+) True CI01000310_01814975_01815586
CI01000310_01737635_01745606.mRNA mRNA upstream 235288 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
CI01000310_01992187_02003475.mRNA mRNA downstream 9416 1991640 ~ 2003475 (+) True CI01000310_01992187_02003475
CI01000310_02017340_02026116.mRNA mRNA downstream 35116 2017340 ~ 2026116 (+) True CI01000310_02017340_02026116
CI01000310_02042995_02059321.mRNA mRNA downstream 59658 2041882 ~ 2059325 (+) False CI01000310_02042995_02059321
CI01000310_02087211_02095576.mRNA mRNA downstream 104987 2087211 ~ 2095929 (+) True CI01000310_02087211_02095576
CI01000310_02098738_02105250.mRNA mRNA downstream 116325 2098549 ~ 2105571 (+) True CI01000310_02098738_02105250
TU504915 other upstream 68558 1911601 ~ 1912417 (+) True G439845
TU504694 other upstream 467634 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 741570 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1289783 651976 ~ 653337 (+) True G439115
TU505742 other downstream 1117193 3099417 ~ 3136328 (+) True G440505

Expression Profile