RNA id: CI01000310_01947567_01956704.mRNA


Basic Information

Item Value
RNA id CI01000310_01947567_01956704.mRNA
length 1793
RNA type mRNA
GC content 0.47
exon number 14
gene id CI01000310_01947567_01956704
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1947567 ~ 1956760 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCAGCTGATATGTTATTGATGAGGGGAATCAACAGGTTCAGAAAAGTTACACTTGGAGGTCAAAAACGAGTCCTTTTTAACACACCTCACCTGAAAGAACAGGAGTGTGGCAGTTGCGGCCACCAAAATGCCTCCAGGTTTAGTGGCGTGGTGGGTGTTGTTGAATGTGCCAGGGGTCGTGACAGGTATTTGGGGAGATCTGGACACAGGCTATTTGGAGAGGCTATTTGTCCAGCTCGACAGCACGTCTGTGGACAGATCTGTTTATTCCACCAAGATCATAGATTTTACAGTGGACTGAAAAGAGAAGGTGTTGACACAACCAAAGATGCCAAAACACCTGATTCCAGAAAACATAAGCAAATGCTAAGTGAAAGTGCCAGAGAGAGAAAAGTGCCAGTCACAAGGCTGGGAAGGTTGGTAAACTTTGGAGGTTTAGCTTTTGGACTGGGCCTTGGAGCCATTGCTGAAGTGGCAAAGAAGAGTCTTGCACCTGGAGATAAATCAGGACAGAAAAAAGCAATTCTGGACTCAAATCCCTTCATATCAGAGGCCAATGCTGAAAGGATTGTTCGGACTCTCTGCAAAGTGAGAGGAGCCGCACTTAAACTGGGACAGATGCTCAGCATCCAGGATGATGCTTTCATCAACCCTCAGCTTGCAAAGATCTTTGACCGTGTTCGACAGAGCGCTGACTTCATGCCCACCAAGCAAATGATGAAAACGGTGGTCGGTGATCTGGGCCCAAACTGGCAGGATAAACTAGAGTACTTTGAGGAGCGTCCGTTTGCAGCTGCCTCTATTGGTCAGGTTCACTTGGCCAGAATGAAGGACGGCAGAGAGGTGGCCATGAAAATCCAGTATCCAGGAGTGGCCAAAAGTATAAACAGCGACGTCAACAACCTAATGACAGTCCTCAGTATCAGCAATGCTTTACCTGAAGGTTTGTTTCCTGAGCATCTCATAGAGGTCATGAGCAGGGAATTGGCTTTGGAGTGTGATTATGTACGGGAAGCCAAATGTGCCAAGAAATTCCAGGAGTTACTGAAGGGCCATCCTTATTTCTATGTGCCAAATGTGGTGGATGAACTGAGCAGCCAACATGTCCTCACCACGGAGCTGGTGTCCGGTTTCCCTTTGGATAAGGCTGATGACCTGCCACAGGAACTCAAGAACGAGATCTGTGAGCAAATTCTGATTCTGTGTTTGCGTGAACTCTTTGAGTTTCGATACATGCAGACAGATCCAAACTGGTCAAATTTCTTTTTTGACCCACAAACACACAAGGTTGCTCTGTTAGACTTTGGAGCCACTAGAGGTTTTGATGCGAGCTTCACTGATGTCTATATTGAGATTATCAAGGCTGCTGCAGACAGGAATAGAGAGGGAGTTTTAAGACGGTCAATTGATATGAAATTTCTGACCGGATACGAGTCAAAGGCGATGGAGGATGCCCATGTGGATGCGGTGATGATCCTTGGGGAAGCGTTTGCTTCAGACGAGCCATTTGACTTTGGTTCCCAGAGCACAACAGAGCGGATCCACAGTCTGATTCCTGTGATGCTGAAGGAGCGTCTGACTCCTCCACCGGAGGAAACCTACTCACTGCACCGCAAGATGGGTGGCTCCTTCCTCATCTGCTCTCGCCTGAAGGCCAAGATAAGCTGCAAAAACATGTTCCAGGAGGCCTACGCTAAATACTGGACAGATCGGCAAAAGGAAACTGCAAAATGAACCATTGGGCATATCAATGTGTGTGTGTGTACAAGACAAAAATGGATTTGAAAGAA

Function

GO:

id name namespace
GO:0016301 kinase activity molecular_function

KEGG:

id description
K08869 ADCK, ABC1; aarF domain-containing kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504920 lncRNA upstream 28759 1918468 ~ 1918808 (+) True G439850
TU504919 lncRNA upstream 33141 1914105 ~ 1914426 (+) True G439849
TU504917 lncRNA upstream 39535 1907363 ~ 1908032 (+) True G439847
TU504916 lncRNA upstream 41180 1905965 ~ 1906387 (+) True G439846
TU504914 lncRNA upstream 42387 1904769 ~ 1905180 (+) True G439844
TU504896 lncRNA downstream 395 1957155 ~ 1959063 (+) True G439826
TU504929 lncRNA downstream 8910 1965670 ~ 1965988 (+) True G439859
TU504855 lncRNA downstream 102010 2062563 ~ 2075101 (+) True G439795
TU504969 lncRNA downstream 217970 2174730 ~ 2175039 (+) True G439894
TU504971 lncRNA downstream 219531 2176291 ~ 2176580 (+) True G439896
CI01000310_01941915_01945313.mRNA mRNA upstream 1925 1941915 ~ 1945642 (+) True CI01000310_01941915_01945313
CI01000310_01887698_01893727.mRNA mRNA upstream 53727 1887300 ~ 1893840 (+) True CI01000310_01887698_01893727
CI01000310_01814975_01815586.mRNA mRNA upstream 131911 1814975 ~ 1815656 (+) True CI01000310_01814975_01815586
CI01000310_01737635_01745606.mRNA mRNA upstream 201880 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
CI01000310_01723036_01723254.mRNA mRNA upstream 224017 1723036 ~ 1723550 (+) True CI01000310_01723036_01723254
CI01000310_01981356_01982015.mRNA mRNA downstream 24215 1980975 ~ 1982224 (+) True CI01000310_01981356_01982015
CI01000310_01992187_02003475.mRNA mRNA downstream 34880 1991640 ~ 2003475 (+) True CI01000310_01992187_02003475
CI01000310_02017340_02026116.mRNA mRNA downstream 60580 2017340 ~ 2026116 (+) True CI01000310_02017340_02026116
CI01000310_02042995_02059321.mRNA mRNA downstream 85122 2041882 ~ 2059325 (+) False CI01000310_02042995_02059321
CI01000310_02087211_02095576.mRNA mRNA downstream 130451 2087211 ~ 2095929 (+) True CI01000310_02087211_02095576
TU504915 other upstream 35150 1911601 ~ 1912417 (+) True G439845
TU504694 other upstream 434226 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 708162 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1256375 651976 ~ 653337 (+) True G439115
TU505742 other downstream 1142657 3099417 ~ 3136328 (+) True G440505

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022401 False 2218 mRNA 0.45 15 NC_007128.7 6467398 ~ 6487813 (+)