RNA id: TU504916


Basic Information

Item Value
RNA id TU504916
length 423
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G439846
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1905965 ~ 1906387 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGACTTTGACGAGTCACCTGCTTTTGAGTCCCAGTAAGACGTACAACACACTGATTGCCATCAACCTACAAACCTGGTGTCCAGATTCAGCCTTGTCCAATGTCTCCAGTCAAATGCAGATGTTCTCATAATTCCTGTTTCCCGTATTGCTGTACATCACCTTAAAAAAAAGACAAATGTGCCAGGAATAAGTCGTAACAGTCATCCATGTCTTGCTCAATGAGAGTACATTAGAAGACCTACAGATGTAAGCGAGTCGCCACAGAAAATACCTCACTGAGACGCGTATCCAGGAACAAAAATAGAAAAGGGACCCTGTGAAGGGTTATGCAACGGCCCACATTTGAGGCCACTTTTGCATCAGCACAAAGGAGAAGTGAATGGCCATGCTGCTGTCTTACTGCTTGTGAAAAGGTAATGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504914 lncRNA upstream 785 1904769 ~ 1905180 (+) True G439844
TU504913 lncRNA upstream 2401 1899366 ~ 1903564 (+) True G439843
TU504911 lncRNA upstream 7715 1897560 ~ 1898250 (+) True G439841
TU504912 lncRNA upstream 9004 1894708 ~ 1896961 (+) True G439842
TU504836 lncRNA upstream 43651 1861838 ~ 1862314 (+) True G439790
TU504917 lncRNA downstream 976 1907363 ~ 1908032 (+) True G439847
TU504919 lncRNA downstream 7718 1914105 ~ 1914426 (+) True G439849
TU504920 lncRNA downstream 12081 1918468 ~ 1918808 (+) True G439850
TU504896 lncRNA downstream 50768 1957155 ~ 1959063 (+) True G439826
TU504929 lncRNA downstream 59283 1965670 ~ 1965988 (+) True G439859
CI01000310_01887698_01893727.mRNA mRNA upstream 12125 1887300 ~ 1893840 (+) True CI01000310_01887698_01893727
CI01000310_01814975_01815586.mRNA mRNA upstream 90309 1814975 ~ 1815656 (+) True CI01000310_01814975_01815586
CI01000310_01737635_01745606.mRNA mRNA upstream 160278 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
CI01000310_01723036_01723254.mRNA mRNA upstream 182415 1723036 ~ 1723550 (+) True CI01000310_01723036_01723254
CI01000310_01693209_01696414.mRNA mRNA upstream 209094 1692729 ~ 1696871 (+) True CI01000310_01693209_01696414
CI01000310_01941915_01945313.mRNA mRNA downstream 35528 1941915 ~ 1945642 (+) True CI01000310_01941915_01945313
CI01000310_01947567_01956704.mRNA mRNA downstream 41180 1947567 ~ 1956760 (+) True CI01000310_01947567_01956704
CI01000310_01981356_01982015.mRNA mRNA downstream 74588 1980975 ~ 1982224 (+) True CI01000310_01981356_01982015
CI01000310_01992187_02003475.mRNA mRNA downstream 85253 1991640 ~ 2003475 (+) True CI01000310_01992187_02003475
CI01000310_02017340_02026116.mRNA mRNA downstream 110953 2017340 ~ 2026116 (+) True CI01000310_02017340_02026116
TU504694 other upstream 392624 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 666560 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1214773 651976 ~ 653337 (+) True G439115
TU503981 other upstream 1237913 651976 ~ 653356 (+) False G439115
TU504915 other downstream 5214 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1193030 3099417 ~ 3136328 (+) True G440505

Expression Profile