RNA id: CI01000310_02098738_02105250.mRNA


Basic Information

Item Value
RNA id CI01000310_02098738_02105250.mRNA
length 2763
RNA type mRNA
GC content 0.51
exon number 4
gene id CI01000310_02098738_02105250
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2098549 ~ 2105571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATAATGCACTTGAACGCATTTGTAAATATTTCTAAACCTCTCATAACATCATTTGGTTCTCGAAGTGTCCCGCATTGAAATGTGGACTCTAGAAGTGATCCATTAATGGCATGCACGAGGGCACTGCTGCTGTTGTGTTCAGAAAAGCCGTCCATATATCATTCATTTGAAGGAGTCGAGGAAATATGGCAGATGAGATGGATAAGCCCTCGGCTGAGGACGTCGACATAGACCCTGATTTCGAGCCCCAAAAAAGGCCTAGGTCTTGCACCTGGCCTCTGCCCAGACCGGAGTCCAATGCTGGAAAAGCAGAACCAGCAGAGGTGGGAATCATTCCCGAGGAAGAGGTGGATGAAAATGGCACTGATGATGCTTGTGCATCTAGTGACATTACAGGCGCATCAAAGCCTGTCAGTGTCACAGAAGGAAATGAGAGTGCTGCTGCTCCTGCAATAGAAACCAATGCTGCCGTCAGTGGTAAAGACACCTATGGCTCTCCTGTTTCTTCCCAACATGCTCTGCCTGCTGCCTGCAGCGACTCCAGCATCAATGGTCTGGTTCCTCAGCAGCCCAGAAAATCCTCTGCCCGCAGGAACGCCTGGGGAAACTATTCCTACGCAGACCTCATCACTCAAGCCATCGAGAGCACGCCAGAGAAAAGGCTGACATTGGCCCAGATTTATGATTGGATGGTCCGGAATGTGCCATACTTCAAGGACAAAGGTGACAGCAACAGCTCTGCAGGATGGAAGGAACAGTCAACCGTGTTCAGTGCAGATAAAGCCATCCTGCAGAGTGTTTGCATCTGCCTGCCACTGAATGAGAAAAAAACAGAAACCATGGGCATATCGTCAGTGTCAGGGTTGCTATTGGCTGCATCGTCCCCACCTCCACTTCCTATTGGCTCTTGGGTACACCATAAGAAGCAATCAGCTGACTGGAAACTATGTAGTGATTGCCTGTTTTCTGTTGCATATGTGAAATGCCAAAAGCCGAACACTCAAAGTTACCCAGTTGAACTGCACAGCGCAGACCAATTATCTGGAAAGCCCAATGGATGGTGCAGAAACTCAATACGACATAACCTGTCACTCCACAGTCGCTTTGTCCGGGTCCAAAATGAAGGAACAGGAAAGAGTTCATGGTGGATCGTCAACCCCGATGGCGGAAAAGGGGGAAAGGCACCGCGGAGACGTGCAGTTTCCATGGACAACAGTAATAAGCTCATCAAGAGTGCCCGTGGCCGTGCCGCAAAGAAAAAGGCAGCTCTTCAGGCTACTCAGGACGGAAGCTCAGAGAGTTCCTCCAGCCTGTCCAAATGGACTGGCAGCCCGACCTCCCGCAGTAGCGACGAGCTCGACGCTTGGACGGATTTCCGTTCTCGCACTAATTCCAATGCCAGCACCCTAAGCGGACGCCTTTCCCCGATCCTGGCCAATCTCGAGATGGACGAAGTTCCTGACGACGACTCTCCCCTGTCGCCCATGCTGTACTCCAGCCCTAGTAGTATGTCTCCGTCCACCGGGTTGACCGAACTGCCCCGTCTAGCTGACCTTGCAGAAACCATGAACCTCAACGATGGCCTCTCTGATAACCTAATGGACGACCTTCTAGACAACATCAGCTTGACGGCTTCCCAGTCTCCGGGTCAAGATGAGAGTGGGGCCAACCTACAGGGAAGCCCTGTGTTTACCTTCAGCTGCTCTGGGAGCAGTCTGGCAATTCCCTCTGGCAGCTATGGCACTAACTCCATGTTCAGCCCTCCGTCCGTCACTGGCCTGAGGCAGTCTCCAATGCAAACTATCCAGGAAAACAAGCAGGCTACGTTCTCCTGCGGTTCCCTCTTTAGCGAGCAGAGTCTGCAGGACTTGCTCAGCTCCGAGTCCAACAGTCGCAGCGATGTCCTTCTTACCCAATCTGACCCGCTTATGTCACAAGCCAGTGCCTCCCTTGCCTCCCTTTCCTCCCAGAATGCCCGTCGCAGTGCGCTGTTGCTGCGTAGTGATCCCATGATGTCCAATCAGGCTGGGCCTGGAGGACAAGCAGGGCTCAAGAAGGTGTCGCCATCTGGATGGCGGATGAACTGCAGCGAGTCAGACTACCAAAGCTTAATGAAGCAGCATCTCCAACAGTCTCCTTTCAGAAGCACATCTATGCAGCTCAACTCCTCTGATTCATTGTTGGCAGGTCTCAACGGCAGCATTTCCTCCGTTCAGTTGGTGTCTCAGGAGCGATTCCCATCTGAATTAGATCTGGAGGCATTAAGTGGGAGTTTCGATTGCGACATGGACACCATCACTCGCAACGATCTGATGGATGCCGATGGCCTGGAGTTCAGCTTCGATTCCCATCTTATCTCCTCTCAGAATGCTAATCTGACTTCAGAGAGCTTCTCCAGAACCAAACGAACCTCCTCCCAAAGCTGGGTACCAGGTTGATCCGGCTAGGCCCAGGAATGTAGGGACGGGCAGAACACCGCATTTGAGCCAAACTGTCCATTGTAAAGCAACTGTACATTATGCTGTAGAAAAGCTATTTGACATCCATTGGAATGAGTTTGAGTTAACGTCAATGATTTACCCAGTCGGTGTTGTAGTCTTGTGGCTGTACGTTTTTGTATTGTCATGATTGAGGCTGGTTTAATGGACATTGTAAAGTGTTTCAACAAATTTATCCTTGAAGTGCTTGCAAGTTAATCTATTCGCCAGTGGCAAGGTAATTAACTCAGCTGCTAGAATATGGTAAGTGGAGTATCGTAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09408 FOXO3; forkhead box protein O3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504855 lncRNA upstream 23448 2062563 ~ 2075101 (+) True G439795
TU504929 lncRNA upstream 132561 1965670 ~ 1965988 (+) True G439859
TU504896 lncRNA upstream 139486 1957155 ~ 1959063 (+) True G439826
TU504920 lncRNA upstream 179741 1918468 ~ 1918808 (+) True G439850
TU504919 lncRNA upstream 184123 1914105 ~ 1914426 (+) True G439849
TU504969 lncRNA downstream 69159 2174730 ~ 2175039 (+) True G439894
TU504971 lncRNA downstream 70720 2176291 ~ 2176580 (+) True G439896
TU504999 lncRNA downstream 143706 2249277 ~ 2292491 (+) True G439924
TU505012 lncRNA downstream 202444 2308015 ~ 2308268 (+) True G439936
TU505011 lncRNA downstream 203260 2308831 ~ 2309114 (+) True G439935
CI01000310_02087211_02095576.mRNA mRNA upstream 2620 2087211 ~ 2095929 (+) True CI01000310_02087211_02095576
CI01000310_02042995_02059321.mRNA mRNA upstream 39224 2041882 ~ 2059325 (+) False CI01000310_02042995_02059321
CI01000310_02017340_02026116.mRNA mRNA upstream 72433 2017340 ~ 2026116 (+) True CI01000310_02017340_02026116
CI01000310_01992187_02003475.mRNA mRNA upstream 95074 1991640 ~ 2003475 (+) True CI01000310_01992187_02003475
CI01000310_01981356_01982015.mRNA mRNA upstream 116325 1980975 ~ 1982224 (+) True CI01000310_01981356_01982015
CI01000310_02115219_02147202.mRNA mRNA downstream 9648 2115219 ~ 2147308 (+) True CI01000310_02115219_02147202
CI01000310_02164574_02165132.mRNA mRNA downstream 59003 2164574 ~ 2165298 (+) True CI01000310_02164574_02165132
CI01000310_02482727_02513419.mRNA mRNA downstream 376498 2482069 ~ 2513779 (+) True CI01000310_02482727_02513419
CI01000310_02549824_02559417.mRNA mRNA downstream 444253 2549824 ~ 2559491 (+) True CI01000310_02549824_02559417
CI01000310_02562834_02569144.mRNA mRNA downstream 456818 2562389 ~ 2569257 (+) False CI01000310_02562834_02569144
TU504915 other upstream 186132 1911601 ~ 1912417 (+) True G439845
TU504694 other upstream 585208 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 859144 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1407357 651976 ~ 653337 (+) True G439115
TU505742 other downstream 993846 3099417 ~ 3136328 (+) True G440505

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022417 True 5649 mRNA 0.45 2 NC_007128.7 6793001 ~ 6810785 (+)