RNA id: TU504799



Basic Information


Item Value
RNA id TU504799
length 1901
lncRNA type intronic
GC content 0.38
exon number 1
gene id G439760
representative True

Chromosome Information


Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1820365 ~ 1822265 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTTTTAATAATTTAGTCAAACATGGAATAGTTTAGCCTTTTATAGCTTTTTAAAACATTTGAACTTTATTAAAACATATACTATAATACTTTTATTTACTTTATAATACTTATTTTTTTTTAGTAACAAATAGGGATGTCACTATACTAAAAATCTAGTAGTCGGTACCAATACCACCAAAAGTGCACAATACTCGATACCAAAGTCGATACCACGGTAAAAATATATAAAAATACAAATAAAACAATGCTATATATTTTTTTCCTGGTAAGTCTAATAGTAGTAAGTAAAAATACCACAGAAATTGAATAATCAAATATAAAATAACTCTGCATAGTTATAACTGTATAAATTAAATATGGATTAATCCTTATTAAAGCTTTTCTTTTGTTGTTTGATTATCATTTATAATACAGACAGCCAATAGTAGACAGTAGCGTGTTTTAAAGGCTGCTGTCACTAAGACCTAATGGACGGAGACAATATGCTGTTACACATGCTGTTCACATTCACATAAACAACGCGAATATACTCCAAGATGGGCATTTTGACACAAATGTGTGTGTATTTGAACGTTTATGTGTAATAAACTGCGAAAATCTGACACTCACGAGAGGCGGCTATGTGTGTGCGCATTGGCTGAGAGTGCACTGACTGAAGACCGTCTCTCAGAGAGCGCGCACATTTTTTTCTCCCTAGGACATATATAGCTTACATTTTACCATAATGTTCTTGCCTACCTGTCTCAAAAAAGTGAAGAAATTGGAATATTTCCATTCTGCAAAACAGCCACTCGCTTCTGCCGACATCTTCAGACAGCGACTACGCATCCAACTGGTTCGAAGTTGCGAACTCACGCGCAACTGCACTACAGCTAACGATTTTAAAGAGGCAACGTTCACTTTTACCTTTAGACGACAAATTTAGATTTTAAATTTAATATTGATTTATACAGAACTGTTGAACTAATTTACAGTATGCAATACAAGTACATTATAAGTAACTGTAATTAAATTACCTAAAAATGAACAGTAATCCCTTACTTTACCTTTTCAGTGGATAAGTAATTTAATTACAGTAACGCGTTACACCCAACACTGGCCACACGATATTTAATTTTGCCACAGCTTGAGTCACATGCTCCTCATAAGCAGGGGGAAATTGAGTGGTGAGTCCTCCATTTCCCCCGCGTCAATGCTGAGTACATCCACATCCTCAGATGCAGACAGCTCAAGCATCAAGCCCTCATCCCGGGCGGAAGAAACCACAAAGCGGGCTTCTGCGTCGGGATCGGGAGCGTTGGATCTGGTCAATGACAGCTGAAAAAGAGCCACAGCGGTCTAATGCACCTCAACCAGCTCCATTTGCGATCCCCACGACATAAGGTGCCCATCCACCGTCATGACGCAACAGCAATCAAGATTGGACTAGTTTCACAGGGGCTTCAGACACTTCCATGCCGAAGGCATTCCCCAAAGTGTCGACATGTGACGCAGCGTGAGTTCCCTCGAAAGAGAACGCATTCCATTCTGATACATCGACTTGTAGACGACCCTGTATAATTCGCTCTTCCTCTTCTTCTACTCAATCAATTTCTGTTTCAAACATGGCTGAATTAACCCAATATTTCCACTTGCGATTGTGAATCGTTTACTGCAGCTGACTGAGTGGATCAGGTAGTCCGAACGTGTGTGATTGGGTGGAGGCGGGGACTAATTTGCATATTAATGGATCTGCATATACTAAATGAAGCAAGGGGAAGCAAAGAGTTGCATTCAAACTATTTTAAAGTAAATAAATTATTTTCACATGAAAAAAACATTCAATTTCATCAAAAAACAATTTCATTTTGATTATCAAAGATGAGTTTTAACAGATAAAATTGTTGACTGCAGGGGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU504803 lncRNA upstream 1106 1818893 ~ 1819259 (+) True G439764
TU504817 lncRNA upstream 41533 1774347 ~ 1778832 (+) True G439776
TU504797 lncRNA upstream 49805 1761392 ~ 1770560 (+) True G439759
TU504718 lncRNA upstream 146899 1670882 ~ 1673466 (+) True G439697
TU504764 lncRNA upstream 168978 1651012 ~ 1651387 (+) True G439741
TU504832 lncRNA downstream 33537 1855802 ~ 1856200 (+) True G439788
TU504836 lncRNA downstream 39573 1861838 ~ 1862314 (+) True G439790
TU504912 lncRNA downstream 72443 1894708 ~ 1896961 (+) True G439842
TU504911 lncRNA downstream 75295 1897560 ~ 1898250 (+) True G439841
TU504913 lncRNA downstream 77101 1899366 ~ 1903564 (+) True G439843
CI01000310_01814975_01815586.mRNA mRNA upstream 4709 1814975 ~ 1815656 (+) True CI01000310_01814975_01815586
CI01000310_01737635_01745606.mRNA mRNA upstream 74678 1737635 ~ 1745687 (+) True CI01000310_01737635_01745606
CI01000310_01723036_01723254.mRNA mRNA upstream 96815 1723036 ~ 1723550 (+) True CI01000310_01723036_01723254
CI01000310_01693209_01696414.mRNA mRNA upstream 123494 1692729 ~ 1696871 (+) True CI01000310_01693209_01696414
CI01000310_01674884_01675180.mRNA mRNA upstream 145100 1674244 ~ 1675265 (+) True CI01000310_01674884_01675180
CI01000310_01887698_01893727.mRNA mRNA downstream 65035 1887300 ~ 1893840 (+) True CI01000310_01887698_01893727
CI01000310_01941915_01945313.mRNA mRNA downstream 119650 1941915 ~ 1945642 (+) True CI01000310_01941915_01945313
CI01000310_01947567_01956704.mRNA mRNA downstream 125302 1947567 ~ 1956760 (+) True CI01000310_01947567_01956704
CI01000310_01981356_01982015.mRNA mRNA downstream 158710 1980975 ~ 1982224 (+) True CI01000310_01981356_01982015
CI01000310_01992187_02003475.mRNA mRNA downstream 169375 1991640 ~ 2003475 (+) True CI01000310_01992187_02003475
TU504694 other upstream 307024 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 580960 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1129173 651976 ~ 653337 (+) True G439115
TU503981 other upstream 1152313 651976 ~ 653356 (+) False G439115
TU504915 other downstream 89336 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1277152 3099417 ~ 3136328 (+) True G440505

Expression Profile