CI01000312_00878228_00881714


Basic Information

Item Value
gene id CI01000312_00878228_00881714
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000312
NCBI id null
chromosome length 1039935
location 878071 ~ 882159 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000312_00878228_00881714.mRNA
GTATTCCTGTGGATATGACCTCGGCAGCTGCTCATGCAGCCACGACTGTCAGTACTATGGCAACAACTGTTGCCCAGATTATGAAAGCTTCTGCATAGCAACAATTCACCCGCCAGATGATCCAACAGGGCTGAACATCGAACCTGCCAGGGAGAACATCAATGCCAACAACACAAGAATGGGCCGCTTCAATGCCAGCATAGCCTTCTACACCTCCAGCAGTTTCTACCAACAAATCTATGACTCTCCATATGAAGTCAACCTGAACCAGCTTCTGTATGTTCAAGTCAAGCTAAACAGGCCTGACAACAGCCTGGATCTCTTTCTGGACACCTGTGTAGCGTCTCCAAATCCCAGTGACTTCAAAGACCGTTCCTTTGACCTGCTGCGTAACGGATGTCCCAGAGACAACACTTATTATTCCTACACCAGCGGTCAGCACTATTATTCTCAGTTCAGTTTCCGGGCTTTCAAGGTTCTCCGGACTCACGCCTACGTGTACCTGCAGTGTAAAGTGATCATCTGCCCCGATAACGATTACAACTCTCGCTGCCGTCAAGGATGTCGCTTCCGTCGCAAGAGATCCCTCGACAGCACCTACCACACCAATACTGTGACGCTGGGGCCAATCAAACTCAAAGGTCAGAGGTCTCTCTGAGTCTCACAAATTTAAAGCAATAATTTAACCAAAAGTGACAATTCTGTCATTATTTACTCTCCCTCGTGTTCCGAACCCATATGCTCATATGGAGCACAAAGGGAAAATTCTGAAGAATCTAGGAACAATGTGAGGATAAACAACACGAGTAAATAAA
>TU509689
CTTACTGAAAGCTCATTTTTGAAATATTTCAACCTAAAATTTGGAATGTTGACATTTTTGGCATTTTTCTTGCAGTTTAAGAGTAAAACATTTTCATAAACTTAAAATTCTATAACTTTTTTTCTATTTCACTTTCATAATTTATACATAATTTATACTTCTACAATAATCTGACTAGTGTCTTCTTTAAAACAAGACCAACCTTAGGTCTATATTCCAAAGCATTCTTGAATTACAACCATTTATGTTTGGATAGTGCATTTTCATGTCTATGTGAAAAAAAGGAGCAGACAGTTATTTAAACCTGTTTTTCTCAGAATTCCATTTCTGAAAATCAGAGCGATCAGCGACTTCAGATAACCATAACTATTAATATGGCATCACATATTAATAATCATACATGTATTAATGGCTTGTTCATCTCTCTACTAGCTCCCTCCTGCAGGTATTCCTGTGGATATGACCTCGGCAGCTGCTCATGCAGCCACGACTGTCAGTACTATGGCAACAACTGTTGCCCAGATTATGAAAGCTTCTGCATAGCAACAATTCACCCGCCAGATGATCCAACAGGTGCTGCTGCCATTCAGTTGAATTTAAATGACACTAATGACATTAAATGGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000312_00878228_00881714.mRNA False 815 mRNA 0.47 4 878071 881714
TU509689 True 625 lncRNA 0.34 2 881368 882159

Neighbor

gene id symbol gene type direction distance location
CI01000312_00849493_00850764 HMX3, HMX3A coding downstream 26892 848816 ~ 851179 (-)
CI01000312_00840984_00842545 HMX2 coding downstream 35028 840682 ~ 843043 (-)
CI01000312_00720528_00726895 GPR26 coding downstream 150883 719177 ~ 727188 (-)
CI01000312_00642862_00646991 NA coding downstream 230139 641824 ~ 647932 (-)
CI01000312_00585354_00590552 VAX1 coding downstream 287449 584955 ~ 590622 (-)
CI01000312_00954156_00962879 SLC22A7B.3 coding upstream 72365 954079 ~ 962972 (-)
CI01000312_00964529_00968018 SLC22A7B.2 coding upstream 82750 964464 ~ 969722 (-)
CI01000312_00969873_00976978 SLC22A7B.1 coding upstream 88096 969810 ~ 977099 (-)
CI01000312_00982855_00990039 NA coding upstream 100834 982548 ~ 990039 (-)
CI01000312_00996558_01026242 TTBK1B coding upstream 113400 995114 ~ 1026242 (-)
G443977 NA non-coding downstream 29501 848415 ~ 848570 (-)
G443986 NA non-coding downstream 54843 823006 ~ 823228 (-)
G443961 NA non-coding downstream 72119 805745 ~ 805952 (-)
G443935 NA non-coding downstream 123327 754522 ~ 754744 (-)
G443932 NA non-coding downstream 132547 745299 ~ 745524 (-)
G444002 NA non-coding upstream 2995 884709 ~ 884971 (-)
G444003 NA non-coding upstream 4098 885812 ~ 886048 (-)
G443953 NA non-coding upstream 9352 891066 ~ 891871 (-)
G444019 NA non-coding upstream 74009 955723 ~ 955940 (-)
G443927 NA other downstream 142258 735468 ~ 735813 (-)
G443871 NA other downstream 269899 604085 ~ 608172 (-)
G444000 NA other upstream 702 882416 ~ 883690 (-)

Expression


Co-expression Network