G444000


Basic Information

Item Value
gene id G444000
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000312
NCBI id null
chromosome length 1039935
location 882416 ~ 883690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU509688
CAGGATATTGATGTGTCATAAGGAAATCCTCCTTATGATGGTTTTGAGTATATAAGTAATAACTGAAAGTTTGAAGACAAACTTGATCAGAAGAGAAAGATGGAAGCCCCGAATTTCCTTCTCTGTCTGCTTCTAACTGCCTATCAAGCAAATACCATTGGATCATGGTCATGGATAACAGATTACTATTCCACGCAAGATCCTTCATATGCCTATTCATGCTGGAATAACTGCGGAAACCACTTTGGCATTTGTTCATGTACATACTTCTGTCAGAACAATGGAAACTGTTGCTATGACTACAATGACTACTGCTCAATGACCACCGACTGGCCAGATACAACAGGTTTCCCCTCCTGCAGGTATAACTGTGGATACAACATCGGCAGCTGTTCATGCAACTACAACTGTCATAACTATGGCAACTGTTGCCCTGACTACGACAGTGAGTTCCTCTTGATCAGACATATTAGATATTTAATATACAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU509688 True 489 TUCP 0.40 6 882416 883690

Neighbor

gene id symbol gene type direction distance location
CI01000312_00878228_00881714 NA coding downstream 702 878071 ~ 882159 (-)
CI01000312_00849493_00850764 HMX3, HMX3A coding downstream 31237 848816 ~ 851179 (-)
CI01000312_00840984_00842545 HMX2 coding downstream 39373 840682 ~ 843043 (-)
CI01000312_00720528_00726895 GPR26 coding downstream 155228 719177 ~ 727188 (-)
CI01000312_00642862_00646991 NA coding downstream 234484 641824 ~ 647932 (-)
CI01000312_00954156_00962879 SLC22A7B.3 coding upstream 70389 954079 ~ 962972 (-)
CI01000312_00964529_00968018 SLC22A7B.2 coding upstream 80774 964464 ~ 969722 (-)
CI01000312_00969873_00976978 SLC22A7B.1 coding upstream 86120 969810 ~ 977099 (-)
CI01000312_00982855_00990039 NA coding upstream 98858 982548 ~ 990039 (-)
CI01000312_00996558_01026242 TTBK1B coding upstream 111424 995114 ~ 1026242 (-)
G443977 NA non-coding downstream 33846 848415 ~ 848570 (-)
G443986 NA non-coding downstream 59188 823006 ~ 823228 (-)
G443961 NA non-coding downstream 76464 805745 ~ 805952 (-)
G443935 NA non-coding downstream 127672 754522 ~ 754744 (-)
G444002 NA non-coding upstream 1019 884709 ~ 884971 (-)
G444003 NA non-coding upstream 2122 885812 ~ 886048 (-)
G443953 NA non-coding upstream 7376 891066 ~ 891871 (-)
G444019 NA non-coding upstream 72033 955723 ~ 955940 (-)
G443927 NA other downstream 146603 735468 ~ 735813 (-)
G443871 NA other downstream 274244 604085 ~ 608172 (-)

Expression


Co-expression Network