G445226


Basic Information

Item Value
gene id G445226
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 1865485 ~ 1947630 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU511079
CAGATCCTCAGTCTCCCTTCACTGTGCTGTAGATGAGGACCGACCCAGCTGCAGTACCCAGCGCCAACAGATCTGACTGCTCAACTGCCGTCCCGGCCTCACATTTCCTCTTCTTCCTCTGTGGAACACCTGAACTGCTCGGCACGGTCCCCATGTCACACAGGTACAGGCTGCGCTTAGGTGCGCGGAAGGCACATATTCCTGTTGTAAAGTTTTGCTGTCAGTATTCCAGATCCGCAGTCTCCCGTCCTGTGCGCAGAGTGCCAGAAACTGCTGTGATTTAGGGCTGAATGCGCAGGGCAGCGCAGCTCGGCCTCCGTCCGCCGCCATCTTACCATTCCGCGTGCGTCCGTC
>TU511081
CGCCGATATATTGTCTGCATGAAAGGTTTTGGTTGACGCGCATCGCAACCACTGTATAATTAACATACACGTCTCTGGGAATTGTGTTTTTAATATTTATGTTGTACTGGGAGAGGTTCACATTTTTTGTTCTCAAGAACCGAGAACGCGGTCATGACTGCAGAGGGCGTAAAAAAAAAACCCCTCATCTGAAATCACACACAGGACACAGAAATCAAACATGAGAAATGACTGTGAGAGAGTAATGACAACAGATAAATTAATGATGTCAGCAGAGGACAGTGTTGATGGGCATAATCATGATAAGCTCATACACTCGGACCACAGGGACATCGGACGCCCGATTAAGGATGTAATCGAGCAGGGGGATGGAGGGGGATTTGATTTGTGAAACGCACAGAATCCCATAATAGCTTTTTTACAAAACAGAGGCAGTTACAGGTCAAAGGAAAAGTGACCCGAATGGACCTCAAACGCATGTGCGCTCTCCGCACGAGGTGCTGTCGGTCACTCAGATCGTTCTGAGAAAGACAACCACAAGTCCAGGCTGCATTGGCTATTGAAATTCTATAAAACATAAGCTTTTGTTTTGTTACAATAAAATTCAACAAAATGAAAAATAAAATGAAATCATATATAAATGTAAGGGTCCTTTTTTTAAATCCAGCGGCCTGATTGGGTACTATTCCTCCTCGCTTTCATTTTCAGGGTCACCATTTGCTTTTGATTCATCGTTCATATCTTCCTCTTCATCATCTTCCTCCTCTTTGTGGTTCTCTTTTTCTTCTGTCACTTCCATTGATGCCTCATCCTCCTCCCAGTTGTCAGAGTCATCCTCAGGACGCCCTTCATCTCCTGAACCTTCATCCTCATCTGAAGACTCTTCTTCATAAACCAGCTTTGCTGTGCGATCAACGTCATCAACACGCTGAGTGCTGTTTCTTGTCGCCACCTGTGTTATAAGCAGGTACAATTTGCCATGAAGCCTGTTGAACTGCTGGTATAATTTCACCCTGCTCTCAATCATATGGTAGATCGAGCCCAACTGTGACACTAGATCCGGCACCGAAGACAAGTATGATGCGTGTTGTGTAAGTACAGCCTTAAACCACTGAACTATAAGCAGAGCCGCGTACGGATGCCCCTGCAGTCTTCTGGACAGCTCTTCCAGCAAAGGCAGGATAGCTGGAGGTGGTAACCGGGAAACAGTGTTCTTTATCAATGCATCTTTTTTGGTTTGAAATATTTTATTAAGGATCCTCTCGTCTTTGCTCTCTAGGCCTTGAACAAGCAGAACAGCAAAACTGTCCGTCTGCAGGGAAGATGAGCCTTTAGCAGCACCCTTCCCACTGGCACTCAACTCAATCTGTTCCAACCGCTCCTCGATAGACATCTCTGTGGTAGAGGCCCCTTTTTTCCTTTTCTCTGCTTCATTGGGAGGTAATTTGATTGGTGCCTTGTGTCCTGGAAGTCCTGGTATTAAAACTTTGCTCTTTTGATTAACAATTGGCGTCTTCACCTTGGAGACAGCTGTCTCTACAGAGAGAGAAAGTGTGGCATGTAAATCTCGGACTAAGCACGCATGTCTCTCTGATGTGTTAAATGGAGTTGTCTCAATGACAGGCTGCAGGTGATTTCCGTACACCAGCACCAGGTTCTGCCTGTCCGCACACAGAGCTGCAGCGAGAAGAGGCACAGGCACAGGCGAGTCTCCCTTCATAGTGGACACCTGCAGGGAACACACTGGCGACAGCGGCTTCTTGCATACCCCATTCAGGAAGTGCTCAAAAAGATGAAGCTGACCATCTTTACACACCACTGCTAACCTCATAGCCTCATCTTTGCGGTTGGACGTCTGAAGGTCTATGTGTTGGGGTTCATCTGTCAGAGTAAATGACACCACAGAGTTCTTGTCTTTGCCATCGGACCTCACCTGCCAGACACTCAGGAGCCTGTCGTGAGCAGCTCCTGACAGAAAGTACATCCCATTACTGTCTGGGGGTCGTGTTGTGGCGAAGCAGAGAGTCGTTACCATGGTAGAGTGACCTGTGAATTTCCTGTACATTTCCTTGGTCTCCAGGTTCCACATCTTGATGGTCATTCCTGCCGAAAGCAGTAGCTTTCCATCTGGACTTATACACAGGCTGCTGACAGCTGATCTGTCTGCCTTCCATTTGCAACTAACTTTTCCTTTCTGCAGGTCCCATTCAGCTATGTGTGTGTCATCTGAGCCGCTGTATAACACAGAGTCGTCTGGATGCCACTGGATGCTGTTCACCGGACCACTGTGTCCTCCATCCAGAGTGCAATGCAGGTCTCCCTTCACTGTGCTGTAGATGAGGACCGACCCAGCTGCAGTACCCAGCGCCAACAGATCTGACTGCTCAACTGCCGTCCCGGCCTCACATTTCCTCTTCTTCCTCTGTGGAACATCCTGAACTGCTCGGCACGGTCCCCATGTCACACAGGTACAGGCTGCGCTTAGGTGCGCGGAAGGCACATATTCCTGTTGTAAAGTTTTGCTGTCAGTATTCCAGATCCGCAGTCTCCCGTCCTGTGCGCAGAGTGCCAGAAACTGCTGTGATTTAGGGCTGAATGCGCAGGGCAGCGCAGCTCGGCCTCCGTCCGCCGCCATCTTACCATTCCGCGTGCGTCCGTC

Function

NR:

description
uncharacterized protein LOC110516461, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU511079 False 354 lncRNA 0.58 3 1865485 1947630
TU511081 True 2659 lncRNA 0.48 18 1865485 1879792

Neighbor

gene id symbol gene type direction distance location
CI01000313_01860321_01864056 TRMT61B coding downstream 587 1860251 ~ 1864898 (-)
CI01000313_01771461_01775597 NA coding downstream 89888 1771398 ~ 1775597 (-)
CI01000313_01759780_01760685 MORN2 coding downstream 104800 1759241 ~ 1760685 (-)
CI01000313_01757085_01758655 NA coding downstream 106524 1757085 ~ 1758961 (-)
CI01000313_01704439_01705320 DYNLT1 coding downstream 160165 1704330 ~ 1705320 (-)
CI01000313_01979306_01986464 NA coding upstream 31377 1979007 ~ 1986850 (-)
G445240 NA non-coding downstream 23948 1841355 ~ 1841537 (-)
G445239 NA non-coding downstream 25462 1839812 ~ 1840023 (-)
G445233 NA non-coding downstream 34174 1829514 ~ 1831311 (-)
G445216 NA non-coding downstream 66212 1799044 ~ 1799273 (-)
G445203 NA non-coding downstream 131735 1733060 ~ 1733750 (-)
G445291 NA non-coding upstream 90451 2038081 ~ 2038412 (-)
G445292 NA non-coding upstream 94219 2041849 ~ 2042141 (-)
G445295 NA non-coding upstream 101012 2048642 ~ 2049080 (-)
G445296 NA non-coding upstream 102066 2049696 ~ 2049970 (-)
G445297 NA non-coding upstream 107256 2054886 ~ 2055214 (-)
CI01000313_00982839_00997272 NA other downstream 876193 982829 ~ 997590 (-)
G444714 NA other downstream 1465389 397607 ~ 400096 (-)
G444653 NA other downstream 1492021 371520 ~ 373464 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location