XLOC_013097 (SHKBP1)


Basic Information

Item Value
gene id XLOC_013097
gene name SHKBP1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 48953963 ~ 48972676 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026011
ATGGCGAGGATTGGAGACATCATTCATCTGAACGTCGGGGGGAAAAGGTTCAGTACCTCCAGACAGACTCTGACATGGGTTCCTGACTCCTTTTTCTCAAGTTTATTAAGTGGAAGAATATCAACGCTAAAAGATGAGACTGGAGCGATATTCATAGATCGAGATCCATCTCTGTTTGCTCCAATTTTGAACTTTTTGCGCACTAAAGAGCTTCATCCAAGGTCCATAGATGTCCACTTGTTAATACATGAGGCGGAGTTCTATGGGATCACACCACTGGTGCGAAAGCTGCAGTTGTGTGATGAGTTGGATCGTTCCTCCTGTGGCAACGTGTTGTTCAATGGATATCTGCCTCCCCCAGTGTACCCAGTGAAGCGCAGGAACAGGCACAGCGTTGCAGGCCCTCAGTTTATGGGCGGCCGCTCGGGGCCGGTGGAAAGAGCTCCAGTGAGGAGGAGCAACACAATGCCACCTAACCTTGGCAATGCTGGCATTCTGGGCAGAGCTGCTGTGGAGGAGAGAGTGCCAGGTCCAGTCTCTGATCCAGGCCTGGTGAGAATCATATGTGGTCATCATAACTGGATTGCGGTGGCCTATGCTCAGTTTGTGGTCTGTTACAGGGTTAAAGAGTCTACTGGGTGGCAGCAGGTCTTTACGAGCCCGCGGCTGGACTGGGTGATCGACAGAGTGGCTCTTAATGCCAAAGTCATGGGCGGCTCATTAGGAGACAATGATAAGATGGTCGCAGTGGCGTCGGGCACAGAAATCATACTCTGGGCAATCTGTCCTGATGGAAACGGAAATGAAATCGGTGTGTTCAGTCTCAATGTACCAGTGGAGGCGCTGTTTTTCGTAGGAAATCAGCTCATTGCCACCAGCCACACGGGTAAAGTGGGCGTCTGGAACGCCGTCACCAAACACTGGCAGAATCAGGATGTGGTTCCCATCAACAGTTACGACACCGCTGGATCTTTCCTTATTTTGGGATGCAATAATGGATCTATTTACTACATCGATGTCCAGAAGTTTCCATTGCGGATGAAGGATAATGATTTGCTGGTGACCGAACTGTACCGAGATCCCAGTGAAGATGCTATCACTGCTCTAAGCGTCTACCTGACGCCCAAAACAAgtgaCAGTGGGAACTGGATTGAGATTGCGTATGGCACCAGCTCAGGGACGGTGCGTGTGATCGTTCAGCATCCGGAGACGGTGGGATCCGGCCCACAGCTCTTCCAGACCTTCTCTGTTCACCGCAGCCCCGTTACCAAGATCATGCTCTCGGAGAAACACCTCATCTCTGTGTGCGCAGACAACAACCACGTGCGCACGTGGACGGTGACGCGCTTCAGAGGCATGATctccactcagcccggctccacTCCGCTGACCTCCTTCAAGATCCTCTCACTGGACGATATCGACGGACATGCGGGCTGTGCTGCTGGAACTGAAATAGgtccaTATGGTGAGCGTGACGAGCAGCAGGTGTTTATCCAGCGTGTGGTTCCTGACACGGATAAACTCTACGTCAGACTCTCCTCCAATGGGAAGAGGGTGTGTGAGGTGCGTTCAGTGGACGGGACCTCCATCACAGCGTTTGTGGTTCATGAGTGTGAGGGCTCCAGCCGCATTGGCTCTCGGCCGCGCCGGTATCTCTTCAGCGGACACAGCAATGGCAGCATCCAGATGTGGGACCTCACAACCGCAATGGAGATCGCTGGGAAAGTGGATATAAAAGctcTCGGTGGACCCACTGAAGAGGAGCTGCTGGAGCTTCTGGACCAGTGTGATCTGACTCTGACCCGAACACCAGACATGAGTCCTGCTGCCTCGCTCACACACTCCTCACGCAACTCcacctgcagtCTTCAGTCTCAGATGAGTGAAAGCAGTCGTGCTGCGTCTGGTTTTCGGTCTGCAGTTCCTCTTTCTGGAAGTCTTCCTCGTCAGCCTCCTCTGGTTCCCCTCACTAATAAACCTCGAGATCTGCCGTCCCACCTGGGCCTCAGTCAGTCCTCCATCCCATCCAGCAGCGGCAGCAGTCCTCACCCTGGTCGAGAGAAGGAGCGGGACGCTCTACGTGACGGGCTGCTGTCCATCCGCAGAGGCAGTTTTGTGGAGCGCTGTCAGGAAAGAGCCAAGTGTTCGGACGCCACCGCAGGTTTGGACCCGAGCAGACGTAGTTTAGCGGTGTGCAATGAACTGGAAGCTCGACTCGGCCTCAGCTCTAGCCTCAGGATGCCATCCTCTTTCTCCGCTCTGCCAGCTGGATGTTTGTCCccaccttcatcatcatcttcatctttatCATCAGCGTCTGTGAGAAGAGCAGCTCCAGCACCTGTGAGTCCTGCTCCTCCATCACTCAGTCCCACCAGATCACAGACTCCCGCCTCCGCACGCCGGCCAATCAGCTCGCCCACCAATGACAGTCCGGCCAATGACAGCACACCAGCTCCAGAAAGCCCCGCTTCTCCGCCTGCCACCAGCCCTAAGCCTCACATGAATGAAACCAGCTTTTAA

Function

symbol description
shkbp1 Orthologous to human SHKBP1 (SH3KBP1 binding protein 1).

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-130415-1 Orthologous to human SHKBP1 (SH3KBP1 binding protein 1).

Ensembl:

ensembl_id ENSDARG00000105050

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026011 True 2526 mRNA 0.54 20 48953963 48972676

Neighbor

gene id symbol gene type direction distance location
XLOC_013096 FO681288.1 coding upstream 961 48943875 ~ 48953002 (+)
XLOC_013095 ppp1r37 coding upstream 17962 48864367 ~ 48936001 (+)
XLOC_013094 bmp16 coding upstream 140967 48793536 ~ 48812996 (+)
XLOC_013093 gemin7 coding upstream 193498 48758916 ~ 48760465 (+)
XLOC_013092 CABZ01102201.1 coding upstream 215789 48670741 ~ 48738174 (+)
XLOC_013098 NA coding downstream 152089 49124765 ~ 49156952 (+)
XLOC_013099 BX663503.1 coding downstream 221148 49193824 ~ 49215023 (+)
XLOC_013100 si:ch211-136a13.1 coding downstream 252876 49225552 ~ 49247479 (+)
XLOC_013101 yif1b coding downstream 275713 49248389 ~ 49267856 (+)
XLOC_013102 CABZ01070258.1 coding downstream 309387 49282063 ~ 49359785 (+)
XLOC_013090 NA non-coding upstream 397136 48523937 ~ 48556827 (+)
XLOC_013089 CR786562.2 non-coding upstream 515350 48438497 ~ 48438613 (+)
XLOC_013087 NA non-coding upstream 749709 48184059 ~ 48204254 (+)
XLOC_013085 CABZ01086755.1 non-coding upstream 829075 47990791 ~ 48124888 (+)
XLOC_013084 NA non-coding upstream 1077986 47873344 ~ 47875977 (+)
XLOC_013103 NA non-coding downstream 383781 49356457 ~ 49357485 (+)
XLOC_013105 NA non-coding downstream 933348 49906024 ~ 49913858 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_00331781_00342935 SHKBP1 coding CI01000028 null 331168 ~ 342935 (-)
bowfin (Amia calva) AMCG00013559 shkbp1,LOC106612709 coding CM030125.1 CM030125.1 36119566 ~ 36132259 (+)