AMCG00013559 (shkbp1,LOC106612709)


Basic Information

Item Value
gene id AMCG00013559
gene name shkbp1,LOC106612709
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36119566 ~ 36132259 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013559
GTGACATCATGAAAATGTCATTGTGCAGAGAAAGCCCTTTCCGACAGACAGGGAAATGAAGACGTGCGCTAAATGCTGGTCTTGACGGACAGCTCGGCGAGCCACTGGTGGGAACCCAGCGCTGCGTGCTGGCCAATCACAGGAGAGCAGAAAGGaagggatttaaaaatatatgtttcagGAAGTGGGACTAAAACCCAATTCTGGGCGTGAAaaagtttatgtttttaaagatcgCAGGAGATGTgaatattattaaatcaattttgtGTGCTAGTGTGCGTGTATGATGTACGGTGCGTGAAGAAATGGCGAATTTGCCGAGAACGGGAGAAATCATACATCTAAACGTGGGGGGAAAGAGATTCTGTACGTCAAGACAGACTCTAACCTGGGTTCCAGATTCCTTTTTTTCAAGtcttcTAAGTGGCAGGATTTCCACTCTCAAAGATGAAACGGGAGCAATTTTTATCGACCGTGATCCTTCCCTTTTCGCTCCGATTCTCAACTTCCTTCGAACCAAAGAATTGCATCCCAGGTCAGTCAATGTGCGTATGTTGATCCATGAAGCTGAATTTTATGGAATCACTCCATTAGTACGGAAACTGCAGCTCTGCGATGAACTGGACAAATCCTCCTGTGGATCGGTCCTATTCAATGGCTACTTGCCTCCCCCAGTGTACCCAGCGAAGAGAAGGAACCGGCACAGCGTGGCAGGACCCCAGTTTGTCAGTGGACGCATGGGCCCCACAGAGAGAGTCCCCGTCAGGAGAAGCAACACCATGCCACCCAATCTGGGCAACGCAGGAATCCTGGGCAAAGTGCTAGAGGAGAAACTCACTGgtCAGGTGGCTGATCCAGGTATGGTTCGGTTGGTGTGCGGTCACCACAATTGGATTGCAGTGGCATATGCCCAGTTTGTGGTTTGTTACAGGGTGAAGGAGTCTTCTGGGTGGCAGCAGGTTTTCACCAGCCCACGTCTGGACTGGGTGATCGAGAGGGTGGCACTCAACGCCAAGGTCATGGGGGGGTCCCTGGGTGACAATGATAAGATGGTGGCCGTGGCATCCTGTACGGAAATCATCCTGTGGGCCATTCGTCCGGATGGAAATGGGACAGAGATTGGTGTCTTCAGTCTCAATGTTCCTGTGGAAGCTCTCTTCTTCGTAGGGAACCAACTGATTGCTACCAGCCACACGGGGAAAGTGGGCGTCTGGAACGCAGTGACCAAACACTGGCAGAATCAAGATGTGGTTCCCATTAACAGCTATGACACTGCTGGGTCATTTCTTATATTGGGATGTAATAACGGATCCATTTACTATATAGATGTCCAAAAGTTTCCCTTGAGAATGAAGGACAATGACCTCCTGGTAACTGAACTCTACCGAGACCCAACAGAAGATGCCATCACTGCCCTTAGTGTCTACCTCACGCCCAAAACAAGTGACAGTGGGAACTGGATTGAGATTGCGTATGGCACCAGTTCTGGGACGGTGAGGGTCATTGTGCAGCACCCTGAGACTGTGGGCTCTGGACCTCAGCTCTTCCAAACGTTCTCCGTCCACCGCAGCCCTGTCACCAAGATCATGCTGTCGGAGAAACACCTCACCTCAGTCTGTGCTGACAACAACCATGTGCGGACCTGGACGGTCACCCGGTTCAGAGGAATGATCTCCACCCAGCCGGGCTCCACCCCACTCTCCTCCTTTAAGATCCTGTCCCTGGAGGACATAGATGGTCATGCAGGCTGCAGTGCGGGCATCGATATAGGGCCTTATGGGGAACGTGATGACCAACAGGTTTTCATCCAGAGAGTAGTTCCCGACACAGATAAGGTCTATGTGCGTCTATCTTCCAATGGGAAAAGGGTGTGCGAGGTGCGCTCTGTGGACGGCACATCCATCACCGCGTTCATGGTCCATGAGTGTGAGGGCTCCAGTCGCATAGGCTCCAGACAGCGCCGCTATCTTTTTACCGGTCATGCCAATGGCAGCATCCAGATGTGGGACCTCACCACAGCCATGGAGATTGCTGGCAAGACTGACTCCAAGGCTTTTGGAGGCCCCACAGAAGAGGAGCTCTTGCAGCTTTTGGACCAGTGTGACCTGGCGCTAACCAGAACACCAGACATGAGCCCTGCGGCCTCGTTCACTCACTCCGCCACCCCCCGTAACTCCACATGCAGCCTCCAGTCTCAGTCCAGTGACTTGTCCCGGGAGAGGGGTGGGGTGAGAGGGGCCGGCCCCTTTGTGGGCACGCTGTCCCGCCAGCCACCCCCCATGCCTCTGAGCAAGCCGCGGGATTTGGCCCTGCTGGGTGCCGGGGTGGGGCTGTGCGTTCCCCCTCAGATTGCCAACAGCCAGGTGTCTCTGAGCAACGCTAGCAGCACACACAGTGCCAGGGGACTGACGGACGCTGGGGGGGGCCCTGAGGCCTGGGCCAGGAGAGCCCTGGGCCAGGAGAGGTGTGCAGCGGATGCCAAGGACCCGGTGGCATCGGCACGGCGGGGCAGCTTTGTGGAGCGTTGCCAGGAGCTCGCCAAGAACACTGATTATGCCAGCCTGGATGCCCGCCGAAGCATTGCGGTGTCCAGTGACCTGGAGGCCAGGCTGGGCATCAGAACGCCCACTCTGTCTTCCACCACCCCCCTGCGGAAAGCCCCCGTCCCTAGCCCCCTGCCAGCGGCCAGGTCCCAGCCGCCCCCTTCCCCTCACCAGCCGAGCGCGTCTTCCCCCAGTGAAGCTAGCAACACTGCCAGCACCACGAGCACGTCTCCAAACCCTGGGTCCCCCACCAGCTCTACCAGTCCCAAACCCAGGATGAATGAGACCAGCTTTTGAACTTCCCTTTGTCTATTGTTTTTCTCACACACACCTTCttcctgcacccccccccccccacacacacacttctcatGCTGTGGATTCCCACGACATATTTATATGGAATGCAATCAATGCTGTTGTGTTTCCCTTTTAAAGATGCACCCACTTCTTTAAGAGTTCCTAACACACAACCAAAGttagtattttcttttattttttatctgacCTGCAATGGgggttttagtatttttttattattctttgccAGACAGGACTGGTCTCTTTTCAAAGCAATACTTTGTAGTATCCGGAGTCTGATAACATAACTGCAGGGTTAACCAGTTTACTCGACCACTTAGCTGTGCAACACTTTTTCAATCCCAGTTTACAATAATGCAAAGGCTGACTGTGCCAATGTGCATGGATCACACTGAAGTGCACTTTTTACCGGTCATGTTAATTTCCTCACAATTCCATCAGTGGTGGAGCACCTGTCGGTTTTATATTACACTGGTGAAAAACTGTTTCTGTGGTTTgattagtttcctttttttggaTTATTGGAAAGTTGTTTTAGAAAAATAGACAATAATTTTGCACAGACTACCATCAAGCATTTTCATGTACAGGAAGCATAAAACTAGCCATTACGGGCTCACTGTGAGATGAATCTTGTAATGCTTTAGGGTTGCACTTAGAGTTCAGCAGAGTCTATCCTACTATAGGGGTTGAGTGCCTTCAGTTACCTCCACTGCTGCCAAAACTGATTAGCAAAGTCTGCTCTTGTAAAttgagcaatacaaataaatcctgttgttttatatattgcctttgtttttatatacttgattaactgtatttattttagtgggGAGTCCCATTCCATTAAACAAATGGAAGCAAGGAGGTAGGAGcctctaaaaaagaaaaaaaactgccgCTACAGGAAACTCACAAGGTGTCTTTTGAACTCAACTTGCGGTACACTGTGTATTTATGAAccagattaaaaaacacatacagcCATTTCTTGTGTGCACACTA

Function

symbol description
shkbp1 Orthologous to human SHKBP1 (SH3KBP1 binding protein 1).

NR:

description
SH3KBP1-binding protein 1

GO: NA

KEGG:

id description
K21953 SHKBP1; SH3KBP1-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013559 True 3872 mRNA 0.51 18 36119566 36132259

Neighbor

gene id symbol gene type direction distance location
AMCG00013558 sptbn4,LOC106612708 coding upstream 8503 36097155 ~ 36111063 (+)
AMCG00013556 NA coding upstream 210821 35899091 ~ 35908745 (+)
AMCG00013552 NA coding upstream 249663 35865785 ~ 35869903 (+)
AMCG00013549 LOC101074320 coding upstream 305544 35806801 ~ 35814022 (+)
AMCG00013545 NA coding upstream 788061 35325991 ~ 35331505 (+)
AMCG00013564 LOC106612713,LOC106580732,LOC105023074,LOC108435511 coding downstream 248710 36380969 ~ 36403018 (+)
AMCG00013568 NA coding downstream 302627 36434886 ~ 36444730 (+)
AMCG00013567 NA coding downstream 330593 36462852 ~ 36476392 (+)
AMCG00013573 LOC107548551 coding downstream 559893 36692152 ~ 36693141 (+)
AMCG00013570 NA coding downstream 577116 36709375 ~ 36712969 (+)
G45276 NA non-coding upstream 2235 36114055 ~ 36117331 (+)
G45230 NA non-coding upstream 135133 35974238 ~ 35984433 (+)
G45229 NA non-coding upstream 145689 35973478 ~ 35973877 (+)
G45228 NA non-coding upstream 148870 35968669 ~ 35970696 (+)
G45227 NA non-coding upstream 151149 35968116 ~ 35968417 (+)
G45301 NA non-coding downstream 27875 36160134 ~ 36187942 (+)
G45343 NA non-coding downstream 273784 36406043 ~ 36408735 (+)
G45373 NA non-coding downstream 481476 36613735 ~ 36613942 (+)
G45395 NA non-coding downstream 566539 36698798 ~ 36700063 (+)
G45397 NA non-coding downstream 572393 36704652 ~ 36704893 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 33723 36060755 ~ 36085843 (+)
G45209 LOC107575789 other upstream 459733 35655302 ~ 35659833 (+)
G45174 NA other upstream 781514 35334890 ~ 35338052 (+)
G45072 NA other upstream 2004627 34114673 ~ 34114939 (+)
G45029 NA other upstream 2420021 33695592 ~ 33699545 (+)
AMCG00013566 NA other downstream 206003 36338262 ~ 36370087 (+)
G45338 NA other downstream 271095 36403354 ~ 36403901 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other downstream 488143 36620402 ~ 36646066 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other downstream 604418 36736677 ~ 36738479 (+)
G45439 NA other downstream 742648 36874907 ~ 36877603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013097 SHKBP1 coding NC_007129.7 CM002902.2 48953963 ~ 48972676 (+)
grasscarp (Ctenopharyngodon idella) CI01000028_00331781_00342935 SHKBP1 coding CI01000028 null 331168 ~ 342935 (-)