CI01000028_00331781_00342935 (SHKBP1)


Basic Information

Item Value
gene id CI01000028_00331781_00342935
gene name SHKBP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 331168 ~ 342935 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_00331781_00342935.mRNA
ATGGCGAGGATTGGAGACATCATTCATCTTAACGTCGGGGGCAAAAGGTTCAGTACCTCCAGACAGACTCTAACGTGGGTTCCTGACTCCTTTTTCTCAAGTTTATTGAGTGGACGGATATCAACACTTAAAGATGAGACTGGAGCGATTTTCATAGACAGAGATCCGTCTCTGTTTGCTCCCATTCTGAACTTTCTGCGCACTAAAGAGCTTCACCCCAGGGTCTTTCCCTCCCCAGTGCGGAAGCTGCAGTTGTGTGATGAGTTGGATCGCTCCTCCTGCGGGAACGTGTTGTTCAATGGATACCTGCCGCCTCCAGTGTACCCAGTGAAGCGCAGAAACAGGCACAGCGTGGCAGGACCCCAGTACATGGGTGGCCGCGCGGGGCCGGTGGAAAGAGCCCCTGTTAGGAGGAGTAACACAATGCCGCCCAACCTGGGCAACGCTGGCATACTGGGCCGAGCTGTCATTGAGGAGAGAGTGCCAGGTCCGGTCTCTGATCCAGGCATGGTCCGAATCATATGTGGTCATCATAACTGGATTGCTGTGGCGTATGCCCAGTTTGTGGTCTGTTACAGGGTTAAAGAGTCTACTGGATGGCAGCAGGTCTTTACCAGCCCTCGGCTGGACTGGGTGATTGACCGGGTGGCTCTTAATGCCAAGGTCATGGGCGGCTCGCTAGGGGACAACGATAAGATGGTTGCTGTGGCATCGGGCACAGAAATCATACTGTGGGCAATCTGTCCTGATGGCAATGGCAGTGAAATTGGCGTGTTCAGTCTGAATGTGCCGGTCGAGGCTTTGTTCTTCGTAGGAAATCAGCTCATTGCCACGAGCCACACGGGCAAAGTGGGAGTGTGGAACGCCGTCACCAAACACTGGCAGAACCAGGATGTTGTTCCCATCAACAGTTATGACACAGCCGGATCTTTCCTCATTTTGGGATGTAATAATGGATCTATTTACTACATAGACGTCCAGAAGTTTCCGTTGCGGATGAAGGATAATGATTTGTTGGTGACTGAGCTGTATCGAGATCCCAGTGAAGATGCTATTACTGCTCTGAGTGTCTACCTGACGCCTAAAACAAGTGACAGTGGGAACTGGATTGAGATCGCGTACGGCACCAGTTCAGGCACAGTGCGTGTCATAGTGCAGCATCCAGAGACGGTGGGATCCGGTCCACAGCTCTTCCAGACCTTCTCTGTCCACCGTAGCCCTGTTACCAAGATCATGCTGTCTGAGAAACATCTCATCTCTGTGTGTGCAGACAACAATCATGTCCGTACCTGGACGGTGACACGTTTCCGAGGCATGATCTCCACTCAGCCTGGCTCCACCCCACTTACTTCCTTTAAGATCCTCTCATTGGACGATATTGACGGCCATGGAGGCTGTGCTGCTGGCACTGAAATAGGCCCATATGGGGAGCGTGACGAGCAGCAGGTGTTTATCCAGCGTGTGGTTCCTGACACTGATAAACTCTACGTAAGGCTCTCCTCCAATGGGAAGAGGGTATGTGAGGTGCGCTCAGTGGACGGGACATCCATTACATCGTTTGTGGTGCATGAGTGTGAGGGATCCAGCCGCATCGGCTCTAGGCCCCGCCGGTACCTCTTCAGCGGACACAGCAATGGCAGCATCCAAATGTGGGACCTCACGACAGCGATGGAGATCGCTGGGAAAGTGGATATCAAAGCTCTCGGCGGTCCAACTGAAGAGGAGCTGCTGGAGCTTCTGGACCAGTGTGATCTGGCACTGACCCGAACACCAGACATGAGTCCTGCCGCCTCTCTCACACACTCGTCTCGCAACTCTATGTGCAGTCTTCAGTCTCAGTTAAGTGAAAGCACTCGAGCTGCCGCTGGTTTCCGGGGCCCGGTTCCTCCCTCTGGTAGTCTGCCTCGTCAGGCGCCTTTGGTTCCCCTCAGTAAACCCCGCGATCTGCCGCCACACCTCGGCCTCAGCCAGTCCTCTCTCGCCAGCAACGGCAGCAATAGCCCGCACCCCGGCTGGGCGCCTCTGGAGCGTGAGAAGGACCGGGACGGCCTCGGAGCCATTCGGAGAGGCAGCTTTGTGGAGCGCTGTCAGGAGAGAGCCAAGTGCTCGGACACGGGTGGCCTGGACGCGGGGAGGCGGAGTTTAGCTGTGTGCAGTGAGCTTGAGGCTCGACTCGGCCTCAGAATCCCATCGTCATTCTCCGCCCTGCAAGCGCCATGTTTGTCAACACCATCATCATCATCATCAGCTGCATCATCCATGAGAAGACCAGCACCTGCAGCACCAAACACCTCTCCTTCACCGCTCAGTCCAGCCAGATCGCAAACGCCCACGTCTCCAAGACGACCCCTCACCTCTCCGACCAGCGAGACCCCGTCCAATGAGAATGTAGCTGGACAAGAAAGCCCCGCCTCTCCATCTTCCACCAGCCCCAAACCTCATATGAATGAAACCAGCTTCTGAGATGAAATTCAGCAAGAAAACATTTTGATTGAATGTTGTAGCCAGCAACAAATTCTGAATATATATCAGTAAATATATATATATATATACACACACACATACATACATATGTAGAATTATATAAAATTAGTGATGTCAAGCAATTAATCGCATCTAAAATGTTTGTTTTTACATAATATGTGTGTGTGTACTGTGTATATGTATATATAAATACACACACATGTATTTAACAAAAATATATTTATATATAAAATATTTACATATAAATATACATGTATACATGTAAATATTTAAATAAATACATGTTTGTGTGTGTATTTATATATACATAATAAATATACACAGTACACACATATTAAGTAAACACAAACTTTTATTTTGGATGCGATTAATTGTTTGACAGCACTAATATATATATATATTAGTTTTCTATATCAAAATTTACTAAATGTATTTCTTCTTTTAGAGCAATGTTCTCAGTGTTTTCACAGGGTGCCTTATAATATTGAATGTGGAGAATATGTATATCGCATGTAAATGAGGAAAAAATTCACATTCCATGGAAAAAAAAAAAGACGTACTTTCCATTGTGACACTTTTGGGTCATATTAAA

Function

symbol description
shkbp1 Orthologous to human SHKBP1 (SH3KBP1 binding protein 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_00331781_00342935.mRNA True 3076 mRNA 0.49 17 331168 342935

Neighbor

gene id symbol gene type direction distance location
CI01000028_00137862_00152223 NA coding downstream 178945 137862 ~ 152223 (-)
CI01000028_00133579_00134596 NA coding downstream 196366 133579 ~ 134802 (-)
CI01000028_00129953_00131814 YIF1B coding downstream 199354 129854 ~ 131814 (-)
CI01000028_00346500_00350741 NA coding upstream 3490 346425 ~ 352059 (-)
CI01000028_00363732_00407780 PPP1R37 coding upstream 20171 363106 ~ 408176 (-)
CI01000028_00443151_00444100 BMP16 coding upstream 100196 443131 ~ 444100 (-)
CI01000028_00444425_00447507 NA coding upstream 101490 444425 ~ 447507 (-)
CI01000028_00474810_00475211 NA coding upstream 131747 473609 ~ 475211 (-)
G144915 NA non-coding downstream 85094 214539 ~ 246074 (-)
G144827 NA non-coding downstream 138552 161248 ~ 192616 (-)
G144855 NA non-coding downstream 193966 135392 ~ 137202 (-)
G144823 NA non-coding downstream 207127 99964 ~ 124041 (-)
G144825 NA non-coding downstream 228468 76010 ~ 102700 (-)
G144946 NA non-coding upstream 76869 419804 ~ 420120 (-)
G144952 NA non-coding upstream 107612 450547 ~ 451153 (-)
G144961 NA non-coding upstream 127128 470063 ~ 470387 (-)
G144962 NA non-coding upstream 127709 470644 ~ 470854 (-)
G144963 NA non-coding upstream 129172 472107 ~ 472418 (-)
G146190 NA other upstream 1754635 2097570 ~ 2111265 (-)
G146238 NA other upstream 1804443 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 2098397 2441332 ~ 2445596 (-)
G149329 NA other upstream 6356578 6699513 ~ 6701240 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013097 SHKBP1 coding NC_007129.7 CM002902.2 48953963 ~ 48972676 (+)
bowfin (Amia calva) AMCG00013559 shkbp1,LOC106612709 coding CM030125.1 CM030125.1 36119566 ~ 36132259 (+)