CI01000028_00133579_00134596


Basic Information

Item Value
gene id CI01000028_00133579_00134596
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 133579 ~ 134802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_00133579_00134596.mRNA
ACACTAAGGTCCAATCCTGAGCCAAGCCGTACGCTTGACCCGGAAGTGATGTCTGCTGAGAGTTTTCCTGCTATTTTTGCGGTGCTAATTTTAGTTTCAGTACCGGCAGCTTTTTCTCGCTTAGACGTCTAAATGTGTCGATAAATATTTATATATGTTTTTCGTGACCTCACTATTTAAGTAAAGATACATTGTTTTGGGGAGAGATGGAGTTTTTAAACCAGAGTGGGTCCAGACAGCAGCCGAAGGTCAGGATGCGAGGCACCGCGATGGACCCCGGGGACCCCAGTCCATTATTTGAGGACACTAGTGCTGGTGTGAACAAACATGATCACAGCGGTGTGGGAAAAGGGCCTGATGTGTATCCAGGACAGGCCTTGCTGTCGGACCCCATGTCTAACCTCGCCATGGCCTACGGCAGCAGTCTCGCCTCCCACGGCAAAGAGATGATGGACAAGAACCTGGATCGATTCATCCCCATCTCTAAGTTAAAGTACTATTTTGCAGTAGACACGGTTTATGTTGGCAAGAAGCTTGGACTGTTGGTTTTTCCCTACATGCATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_00133579_00134596.mRNA True 566 mRNA 0.48 3 133579 134802

Neighbor

gene id symbol gene type direction distance location
CI01000028_00129953_00131814 YIF1B coding downstream 1765 129854 ~ 131814 (-)
CI01000028_00137862_00152223 NA coding upstream 3060 137862 ~ 152223 (-)
CI01000028_00331781_00342935 SHKBP1 coding upstream 196366 331168 ~ 342935 (-)
CI01000028_00346500_00350741 NA coding upstream 211623 346425 ~ 352059 (-)
CI01000028_00363732_00407780 PPP1R37 coding upstream 228304 363106 ~ 408176 (-)
CI01000028_00443151_00444100 BMP16 coding upstream 308329 443131 ~ 444100 (-)
G144823 NA non-coding downstream 9538 99964 ~ 124041 (-)
G144825 NA non-coding downstream 30879 76010 ~ 102700 (-)
G144832 NA non-coding downstream 73884 59469 ~ 59695 (-)
G144830 NA non-coding downstream 74548 58683 ~ 59031 (-)
G144806 NA non-coding downstream 107257 25951 ~ 26322 (-)
G144855 NA non-coding upstream 1589 135392 ~ 137202 (-)
G144827 NA non-coding upstream 26446 161248 ~ 192616 (-)
G144915 NA non-coding upstream 79737 214539 ~ 246074 (-)
G144946 NA non-coding upstream 285002 419804 ~ 420120 (-)
G144952 NA non-coding upstream 315745 450547 ~ 451153 (-)
CI01000028_00474810_00475211 NA other upstream 338807 473609 ~ 475211 (-)
G146190 NA other upstream 1962768 2097570 ~ 2111265 (-)
G146238 NA other upstream 2012576 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 2306530 2441332 ~ 2445596 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013101 yif1b coding NC_007129.7 CM002902.2 49248389 ~ 49267856 (+)