CI01000028_00346500_00350741


Basic Information

Item Value
gene id CI01000028_00346500_00350741
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 346425 ~ 352059 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_00346500_00350741.mRNA
AGTGTTAATACCTACACATGTTGAAGCCAGCATAAAGGCATTACTGTCTCTCCATTCAAGCTATAAGCACATAATGATTAAAGCTGCATTGGCTGTTTTCCCTGCTGGACCTTCACTTGCTGCTTATTGTCGTGCAGCTGAAGTAGGGTTTGGAGTGTGTCCAGAAAGAGCATTCCATTGATTTTTACAGACTGAAGTCCTGATAGAGGTCATAGCAACGGAGACACATCTTTGAAACTTAGTATTCATGTCAACTCTGTGCTGTTTGTACTCTGTTTCACTTACAACAACAATCTCCTCTACATTTTACACAATTCTCACATTGATCACTGTGAAGTGGAGAACATCAGGATATCAATCTACCTTTGATTTAACAAGCGGCGTCGCTAGACCCTTTTATATGGAAGCTTGTTTCTGCCATGGAGTGAAAAATAAAAAAGGTATTTTTATCTCACAATTCTGAGTTTACATATTGCATCTAATATTAATGAAATAAAAGGCCACTTAAGTGCACTTAAAGGGATACACTTTCATGACTGTTTCTTAACACACTTTTAAAAAGTGCACTTTGTAATAATGTCAAATTAAAAGTTTTACTTTAAAGTACATTTTAAATGTTTTGTCTTTTGCCATGCTTTAAAGGTTGACTAACATACTAAAGCACATAAAATACTTAATTATAATTTTAATTGTGTGATGTAATGGTAAAAACATGACATACAAGTTTCAATAGAAATGACATAAAAGTATGTTTTAGTTTGTCATAAATGCTTGTCAGTACATTCAGCAGTATAACCATATTTCAAAGACAACAGAATTATGAAATTACATATAAAGATATACTTAAAAGCCATAATTAGCAATTCATGTTTCTTATTATGGAATATTGCAGTATTTATTATAAATGATTTATCGGTGCAAATCATTATTGTTTTTAATTCATGTTCCTCATGATCTTGAATCAGAATAACTTCCCCTCCCTCTTGTAGCGACATCTCTTCTCTGAAGATGAGGGCGGGGCAACCTGTCACTCACATGAGATCCACCAATAGCAAACCATCAAACAATTCCACATGGACAAAAGCCCCGCCCTACATTTGTTCTTGTTTGAGAAGCCACTATCGCAACTTCTGTTTCATGTTGACTTTAAGTTCAACTAATGTCAAATTTAAACTATAATAAATTTTTATTTAATTGACATTTAAGTGTCCAAAAAAATTACATTCAGTTTGCACTCAAATATGTTCTTAAAAAGTATAATATTTCCATAATAACTTGTACTTCATTCACATATCATTGATTGTTATTGTACAGGTCAATGGCAAGGATATCTACTCATAAGTGCATGCTGGTCTTGACCTTGACCTTCCTGGTCTGTGAGATTGTGGTCGGCCGAATCTGCAGATCCCTCCTGATCGCAGTGGACAGCTTCCACACGCTCTACGTTTTCATACATTTGTCTCTATCCGCATTAAAGCATCATCCTAATTCTCGCTGTTCACCGGATACCTCCACCACCACTGGTCCCTCACTTCCAAACATCTCCGTTTCTGAAGGCCCGAGTCCTCCATATGATGAGCAGCACTACAGAAGGATGCGCCTCGAGCCGTTTGGCATCCTGATCTCCGCTCTGCTAATGGCGTCTCAGTGCGTCTCCATTAGTCTGGAGATTCTCACCCACCTCGTGCAGCCAGAAGCCATTCAACACCCACTCTTGTCTATTGTGGTTGGAGGAGCTAGTCTGTTATTCAATATACTCGTGTTGGCCTGGAGAAGGAGAGGCAGCGGGATGGATAAAGCTGCTGATGGGATCAACAAGTGCCTGATGCGAAACGACCCTCATTCTACATCAGAAAGCAAAGATAGAGTATATGAAGTACCATGCAATCAGTTCTACTTTGTGACCCAAAGTTTCTGGTGTTTTGTGCCTCTGTATTTTAGTATGATCAGTAAGGTTAATGGCTGTGATGATGATGATCACTGTGTTGTAGAAAGTGCTCTCCAGGACGACGCACTGATGTTCTGCAACCCTGAAGCGTCTAGTGTTCTGGATCCAGATCAAGGCTCTCAGGACGGCTCTTCTGAGTTACCAAACCTCAGCGTCATTAAACCAGTTCCTGAGTCCAATTCCAGGATCGGTGAAAGTTCTCAGGAAATCGTTCAGCCTACAGAGCAACTTGCAGAAGAACCTCGTCACTCCGTCTGCACCGAACACACTGGATCCGGGTTTAGAAGACTGCAGCTCGGCTCCATCAGTGTGGTCCAGGATCTTCTGTGTTCAGTCCTCATTGTGACTAACGGTCTGGTTCTCCTGCTCTCTGAAGCGCACTGCCATCGGCTTCACTCGGACTGTCATCTCCTGGTCTATCTGGACGCAGGTTTCTCCACAGTCGGTGTGCTGGTGCTGTTATCCGCGGCCCTGCCGAAGCTGCACCGCTATGGGCTGCTGGTTCTCCAGGCGCCGCCGCTGCATCTCTCCATCGGTCAGGTGCGGCTTTGCCTCAGTGAAGTGCCAGGCGTGTTGTCGGTTCACGAGCTGCACGTGTGGCAGCTGTCAGACGCGTTGATGGTGGCGTCGCTGCACGTGCACTGTCCCGAAGGGCTGAGCGCAGCGGAGTGCGACGATCTCATGGCGAGGGTCAAAGCAGTGCTGGCTACTTTTGGCATCGAGCACTGCACCGTGCAGCCCGAGTTCCTCGCCTCGGACGGGAGCGGCGCGGCGCCCGGTGACGGTTCGGGAGCAGTGCGGCCAGTCTGCAGCTTGAGCTGCGGGCAGGAGTGTGCGGAGAAGCTCTGCTGCTCACCGCAGGCGGATGATTCCCATATTCCCAAGACGGAGACTCCCGTCTGTGTCCAGGAGGAGAAACCCTGCTCTCCAGCGCCACCGAGTGTTGATGAGATCAGAGATGTGATTATTGAGAACACGTACCTGTGATTGAACAAGGTTGTTGGTATTTTTGTGAACTGACAGTCTTGTAATTACTGTACATGATGAGACTCCAGCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_00346500_00350741.mRNA True 3010 mRNA 0.44 3 346425 352059

Neighbor

gene id symbol gene type direction distance location
CI01000028_00331781_00342935 SHKBP1 coding downstream 3490 331168 ~ 342935 (-)
CI01000028_00137862_00152223 NA coding downstream 194202 137862 ~ 152223 (-)
CI01000028_00133579_00134596 NA coding downstream 211623 133579 ~ 134802 (-)
CI01000028_00129953_00131814 YIF1B coding downstream 214611 129854 ~ 131814 (-)
CI01000028_00363732_00407780 PPP1R37 coding upstream 11047 363106 ~ 408176 (-)
CI01000028_00443151_00444100 BMP16 coding upstream 91072 443131 ~ 444100 (-)
CI01000028_00444425_00447507 NA coding upstream 92366 444425 ~ 447507 (-)
CI01000028_00474810_00475211 NA coding upstream 122623 473609 ~ 475211 (-)
CI01000028_00534236_00534848 NA coding upstream 182148 534207 ~ 534848 (-)
G144915 NA non-coding downstream 100351 214539 ~ 246074 (-)
G144827 NA non-coding downstream 153809 161248 ~ 192616 (-)
G144855 NA non-coding downstream 209223 135392 ~ 137202 (-)
G144823 NA non-coding downstream 222384 99964 ~ 124041 (-)
G144825 NA non-coding downstream 243725 76010 ~ 102700 (-)
G144946 NA non-coding upstream 67745 419804 ~ 420120 (-)
G144952 NA non-coding upstream 98488 450547 ~ 451153 (-)
G144961 NA non-coding upstream 118004 470063 ~ 470387 (-)
G144962 NA non-coding upstream 118585 470644 ~ 470854 (-)
G144963 NA non-coding upstream 120048 472107 ~ 472418 (-)
G146190 NA other upstream 1745511 2097570 ~ 2111265 (-)
G146238 NA other upstream 1795319 2147378 ~ 2160038 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 2089273 2441332 ~ 2445596 (-)
G149329 NA other upstream 6347454 6699513 ~ 6701240 (-)

Expression


Co-expression Network