XLOC_000131 (zgc:77880)


Basic Information

Item Value
gene id XLOC_000131
gene name zgc:77880
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10305611 ~ 10315206 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000244
AACGCTCGTCCTTTTATGACGTCATCAAGAAGACCGCAGATGGGAAGATGGCTGCGTTTCGCTGTCGGCGAGACCCGTGCGGCTTTATTTGTCTCATTTTAACTTACTTCAGCGTCTTTTACGCGGACTATGTTGTAATTCAGTATGTATTGATTCCCGCGTATTCTGGAAGtgTATGGTGCACTCTCCATGGATCAGTGTTTAATATTATTCTATTTCTGCTACTGGCGTGTCACTCAAAGGCAGTGTTCTCAGACCCTGGAATGGTTCCTCTACCtgaaacagccattgacttctctGACCTGAGATCGCAGTCGAATCGTCTAAATGACAGAGGCTGTGAGGGCTGGACCGTGTGCAGTCGGTGTGAGACGTATCGTCCTCCTCGAGCTCATCATTGTAGAGTGTGTCAGCGCTGCATCAGGAGAATGGACCATCACTGCCCGTGGATTAATAACTGTGTTGGAGAGCTTAATCAGAAATacttcattcagtttcttttctaCACGGGCATGGCTAGCTTGTACTCCATGGCACTGGTGGTTTCAGCCTGGGTGTGGAGGATAAGGAGTGAAAGAGAAGGAGATGAAGAGAAAGAAGGAGAAGAAGCTCCCAGCAAACATCTCATTGTggcacattatattattttactggtGGAGTCGATActttttggagtttttgtcttgGTAATATTTTATGACCAGCTGGTGTCCATAATAACTGATGAGACGCCCATTGAGCAGATGAGGAACAGACTAATAAAAGACAAAGCCAACAACAGCCAGCCATCACACGTTGCACACACAAGAAAGCCAAAAATTGCACTGCTGAGAGAAGTTTTTGGACGCGGTTCTATACTGTGTTGGTTATTCCCGCTTCATTCCACCCCTCCTTCTGTTGGCGGCATCAGTTATTCAGCACTTCCTGATTACGACGTGTAACACTAACCAGTTTTTCATCAGTCCTTTTGACCGCTCAATCAGTATGGCAGtatcatatatgtgtgtgtgtgtgtgttgggaacTGTGGATATTACGTTACTGAGATGCAGATTTCAGCTCTCATGAATGGTGTGTGAGTGCTTTTGTGTACTTCTGCTTACTGCTTCTCCATTACACACAGAGATTATTACAAGGTACTGAATCTTTTTTCTTCATCTAATCAACTAAATGTTTCTTTTGATATTACCCGGgagattttatgatttttttttttttttttttttcggaagaGTCTTGTTTAAAGTTGTTAAATCAGTATGTTAACCAGCAACCAGTATACATTGTGTTGTATACGGTACAGTAACCACTAATTTGCATTAAGGGACAAGGTCAGCTGTGTTGACTTTATCAGGTAAATGCAATAGGACTCGCCGTCATCCATTTCGAtttcataatgtgtgtgtgtgtttgggtacATGGACTGTACTCCATTTTACATGAGGACTGTATATAAAGATGTATTTTATAACTTTGATTTCTGACAAAAGTGTTGCTGCGTTTTCAGGGTATtagactattttatttttatttatttgtttggtttgttCGAAACGTTCACGCTTTTGCTGTTTTTCGCGGACAGCTTGAGGGATGTGTGTACATAACAGATGAACTTGTATATTGATAATGTTTACATGgatatttatttgtgattttgtGTCTGTCTAAATGCTGCTCTGACTCACGTGAAGTAAAAGACATGTTTTTCATA

Function

symbol description
zgc:77880 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum.

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1901 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum.

Ensembl:

ensembl_id ENSDARG00000030563

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000244 True 1713 mRNA 0.41 9 10305611 10315206

Neighbor

gene id symbol gene type direction distance location
XLOC_000130 eif3f coding upstream 1567 10297027 ~ 10304044 (+)
XLOC_000129 npy2rl coding upstream 70274 10221568 ~ 10235337 (+)
XLOC_000128 rbm46 coding upstream 167835 10127163 ~ 10137776 (+)
XLOC_000127 si:ch73-132f6.5 coding upstream 181419 10074343 ~ 10124192 (+)
XLOC_000126 fgb coding upstream 246115 10051763 ~ 10059496 (+)
XLOC_000132 pip4p1b coding downstream 2871 10318077 ~ 10325025 (+)
XLOC_000133 AL935188.1 coding downstream 48514 10363720 ~ 10363851 (+)
XLOC_000134 dachb coding downstream 63500 10378706 ~ 10496809 (+)
XLOC_000135 NA coding downstream 146838 10462044 ~ 10462882 (+)
XLOC_000136 NA coding downstream 302318 10617524 ~ 10617930 (+)
XLOC_000121 NA non-coding upstream 353738 9946664 ~ 9951873 (+)
XLOC_000120 NA non-coding upstream 390981 9886955 ~ 9914630 (+)
XLOC_000116 BX323038.1 non-coding upstream 1020260 9277846 ~ 9285351 (+)
XLOC_000111 NA non-coding upstream 1173121 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 1329189 8967479 ~ 8976422 (+)
XLOC_000137 NA non-coding downstream 330058 10645264 ~ 10668028 (+)
XLOC_000138 NA non-coding downstream 330158 10645364 ~ 10680841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_01519715_01526925 NA coding CI01000300 null 1519579 ~ 1527151 (+)