G466227


Basic Information

Item Value
gene id G466227
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 7312083 ~ 7314812 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU535193
AGTTCCAGCTGATTTATTTGTGTCAGATACAGACTTCAGCATGACGACATGTAACTCATTTCCTTTGCTACAAAACGCAGATGGTCCATTTTGAGAGTATATTGCACAAAAATAATGAAAAACAAATGTGCCATTATGAAGGAGAGAAAAAAAAAAAAAAAAAAAAAAATCCAGTTTTACACCTGCTATTTGGGACCCATTCACACAGATATACATAAACTCCTAGCTTTACTATATTACAGAACATATACAATCTTCAATCTAGTACCAGAAATGAGGCTCATGTGTTCCCCCAATTCCATTGTACACTTCCCTATAGAAACGCTTCAGATCTACAGCTGTACATTTGCCTTGAGTAAAATAACCAGGCATTTAAATGCAAGTCGAATTCTCAGTTTAATTCTTGCATGCTTTTACAAATGAAACCGGGTTGAAGTGCCTGAAGAAACCTCACTTAAAGCACAGTAAGAACATTCCCTTTAACTGTACAAAAATATGCCAGAAAATATTTTACTTTTTTTTTTTTTAAAAAGATGAGGTATGTTGGTCATGTATCAAAATGCTTCCTGCCATACCTGTGTGTTCTAGAGTGGTTATCTGCTTAAATATTCCCATACTTGGAGGGAAACTGAACCGATTACAAAAGAAAAAAAAAAAAAAAAAAAAAAAGCAAACAAGCATTTGTGGAATACAGAAATTCATAAGACCTCAGAAAAAGTTCCATCCTGAACGGTGTTTCAGAATTGCCTCCAATCGGTCCAGTGGCCGTTTGCCAGCTCCCTGTAGAGATATGGGTGGGATGGGAATGCATAGTTCAGATTTTACATTTTGCGCTCCACCACAGTTTAAGCAGTTTCACTGCAACCCCACAGAATAACCACATACTATGGCAAGATACTTTAACATTTATTGCTTTAAACTAAATATCTATTTTCATGACTAGCACTTATTTTAGTTACTAGTAAGCAATTCAGAGGTGGTTAGTATCTTAATTTCACTAGCAATCAATCATTTATATAACACACTATTACTTATTCCTACTAGTCACTATCCTATACCAACTGGAATACACACTAGTGCCTGATAGTTAGGTACTAGTAAAACTGGAACATATACCAGCAACAGTTTCAATACATAGTGAATAATTCATATCTGGCAATGACGACAAGAACAAAAAAAAAAAAAAAAAAAAAAACACAATTTGTTACCAGTAACAGCAGAATAGTTACTTGTCAACATAACAGAATAAGTAATATTGCTAGTGAAGTTCTAGTGAACTGAAAAAGAAACCAAAGAATTACTTACTAGGATAAAAATAAGTGAGTCAGATAAAAATAGATGCCATGTAGTTTTAAGAAATACATGTTAAAAGCGCTTGCCATACACAGCCCTGTCAATGTTGACCATGTTGTCACTTTTTTTCTACGTTGCAAGTCTCGTAACACAGGTTCCGCCGTCTTAACCGGGACAACCACAGAGGCAGAGTCAAAAAAATAACCTGAAGATGCGAGATGCCTCCTTGGTTCTGGAGGAGTTCGTCAGTTAGTAAGTGAAAACAAGGTCTGAAAAGTTCGCCTCCAGCCAGTCTCCCGCGATCATCTCACTGAGCTCGGGAGTGCAATAGTCCGGGAACTCAAAGTGAGAACCAAGGCTGCCCTCGCTGAAAGAGTCCAAATCTTTATCCACCAGAGAGAGACAAAGGTTTCCTGAAGTGTTCCCTAAGTCCGCCGCGTGAGAGCCTGCCGCTAAGTTCAAACTGAAGTCTACCAGCAAGTCATCGGAGTCCTCGCTGGAGCTGCTGGACGAAGAAGAGACGGACCTGAAAGATGATGCTGGTGACACCGAGGCAGGGTAAGCTGCGCTCTGCTTGGTAATGTTCTTGAAGTTGTAAAACAGTCTGCTGCCGGGAGTTGCGCTCGTGTGCCTGGACTCCTCGTACATGCTCGCGCCCTCGGACTCCGCAGCAGAGCTCAGCGTGGGGCTCGCGGGGACGTTGTGCAGCCTGATGTTCTCCTCGTCCTCATAGTCATCCTCCTCGTCGTCGTCATCATCATCGTCGTCGTCTTCGTCGTCAGTAAGTTCCCTTTTGATAGACTTGGTCACTTTTAAGTTTGTGAAAACATAGTTGAATCTGCAGTCTTGTGAAGAAGCTCTCGCTGTAATGTTCCCCGGTTTGTTCGGCTTGAGTTTTGCGCACTTCTTCCCTGCAGCTTTGACACTTTTGCCGATCTTCTCCGGCGACTGCACCGCTGGTTTTGAAGAACTGTCGAGCTTTGGTTTTTTCTTGGGTCTGTATTTGTAGTCGGGGTAGTCAGCCATGTGTTGGAGCCGGAGCCGCTCGGCTTCGCGGATAAAGGGAATCTTTTCACTGTCCTTCAGCATTTTCCACCGCTTTCCTAGCCTTTTGGAGATCTCAGCATTGTGCATATCCGGAGACTGTTCCATGATTTTTCTCCTCTCGATCTTTGACCACACCATAAAGGCATTCATGGGTCGTTTAATGTGGCCGGTGGCTGTCTTGCACCAGTCCGGTTTCGGTGGCACAGGGCTGCACGCCATCAGTTCGTTCTCCTCGCTGTCTGTGGTCTCTCGCGACATGCTGCTCTCCATCTCGCTGTGCTCCGTCTGCTGCACCATGTTCAAAGATACTTATCCCCCTTGAAAAACTCGCAGCTGCCGCACTCCAGCCAAACCTCTTTTCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU535193 True 2704 TUCP 0.43 2 7312083 7314812

Neighbor

gene id symbol gene type direction distance location
CI01000325_07140324_07162617 KIDINS220B, KIDINS220 coding upstream 148420 7140324 ~ 7163663 (+)
CI01000325_07120140_07136417 MBOAT2B, MBOAT2 coding upstream 175582 7120140 ~ 7136501 (+)
CI01000325_07077438_07097577 ASAP2B, ASAP2, ASAP3 coding upstream 214084 7077438 ~ 7097999 (+)
CI01000325_07053839_07064829 ADAM17 coding upstream 247232 7053839 ~ 7064851 (+)
CI01000325_07037122_07051586 YWHAZ, 1433B, 143B2, YWHAQ, YWHAQA, YWHAQB, YWHABA, YWHABB, YWHAB coding upstream 260473 7036891 ~ 7051610 (+)
CI01000325_07350073_07369476 NA coding downstream 34426 7349238 ~ 7369776 (+)
CI01000325_07487518_07491720 RNASEH1 coding downstream 172706 7487518 ~ 7492273 (+)
CI01000325_07556421_07561822 NA coding downstream 241368 7556180 ~ 7561897 (+)
CI01000325_07573712_07597027 MYT1LA coding downstream 258900 7573712 ~ 7597027 (+)
CI01000325_07604006_07618057 NA coding downstream 289194 7604006 ~ 7618111 (+)
G466330 NA non-coding upstream 119776 7191755 ~ 7192307 (+)
G466234 NA non-coding upstream 210156 7101582 ~ 7101927 (+)
G466308 NA non-coding upstream 280672 7031181 ~ 7031411 (+)
G466307 NA non-coding upstream 281604 7030255 ~ 7030479 (+)
G466237 NA non-coding upstream 314530 6993856 ~ 6997553 (+)
G466451 NA non-coding downstream 183806 7498618 ~ 7499239 (+)
G466452 NA non-coding downstream 184524 7499336 ~ 7499796 (+)
G466479 NA non-coding downstream 439382 7754194 ~ 7754549 (+)
G466490 NA non-coding downstream 473528 7788340 ~ 7788622 (+)
G466515 NA non-coding downstream 517535 7832347 ~ 7834377 (+)
G466236 NA other upstream 307428 7003617 ~ 7004655 (+)
G466137 NA other upstream 692612 6617200 ~ 6619471 (+)
G466144 NA other upstream 810105 6498766 ~ 6501978 (+)
CI01000325_05655953_05691697 PRIMA1 other upstream 1618100 5654840 ~ 5692630 (+)
CI01000325_05549713_05553140 TMEM251 other upstream 1757506 5549713 ~ 5554577 (+)
G466219 NA other downstream 167224 7482036 ~ 7486407 (+)
G466752 NA other downstream 1259304 8574116 ~ 8575210 (+)
CI01000325_08732866_08734588 NA other downstream 1417702 8732514 ~ 8734758 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location