XLOC_013285 (srgap1a)


Basic Information

Item Value
gene id XLOC_013285
gene name srgap1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 12867400 ~ 13056801 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026286
GTGATGAAGACCTATCATATGTATCACACAGAGAGCATCAGTGCTGAGGGTAAACTGAAGGAGGCTGAGAAGCAGGAGGAGAAGCAGATCGGCCGCGTTGGAGATCCAGTTTTCCACATCCGGCTGGAGGACAGACACCAGAGACGCAGCTCCGTCAAGAAGATCGAGAAGATGAAGGAGAAGAGGCAGGCGAAGTATTCGGAGAACAAGCTGAAGTCGATCAAAGCTCGGAACGAATACCTGCTGACGCTGGAAGCCACTAATGCTTCAATCTTCAAGTATTACATCCACGACTTGTCTGATTTAATAGACTGTTGTGATCTGGGATATCATGCCTCTCTGAACCGGGCATTGCGGACCTACCTCTCAGCCGAATATAACCTGGAGACGTCCCGTCACGAGGGCCTGGACATCATAGAGAATGCAGTGGACAGTCTGGACCCCCGTAGTGACCGCCAGCGCTTCATGGAAATGTACCCGACCGCCTTCTGCCCTCCCGTCAAATTTGAGTTTCAGGCACATATGGGAGACGAGGTTTGTCAGATCACGGCACAGCCTCCTGTTCAGGCTGAGCTCCTCCTGAGGTTCCAGCAGCTTCAATCCCGCCTCACCACACTGAAGATCGAGAACGAAGAGATCAAGAAGACGTCTGAGGCGACACTTACTACCATCCAGGACATGGTGACGGTTGAGGATTATGACGTATCTGAATGTTTCCATCATAGCCGCTCAACTGAATCAGTTAAATCTACCGTGTCTGAAACCTACCTCAGCAAGCCGAGCATCGCCAAGAGACGCGCCAACCAGCAGGAGACTGAGCAGTTCTATTTTATGAAGTTTCGCGAGTATCTGGAGGGCAGCAATCTCATCACTAAACTCCAGGCAAAGCATGATCTACTGAAGAGAACCCTCGGTGACGGTTACCGGCCTGAATATGCAACTACAAGGCCTCCCAGTCTTCCTCCTAAACCGTTTGGCACACAGAGGGCCAGGCCACGCTCTGTATTTAACGTTAAGCTGTTTAATGGCAATTTGGAGTCTTTTGTTAAGGACTCTGGTCAAGCAATACCTCGAGTTGTTGAGAGCTGTATTCGATTCATCAACCTGTATGGCCTCCAACATCAAGGAATATTCAGAGTGCCTGGATCTCAAGTTGAAGTCAATGATATCAAGAATTCATTtgagagagGGAACGATCCACTGACAGACGAAGAGAATAACCACGATATAAACTCTGTCGCTGGCGTTTTGAAACTCTACTTTCGGGGCTTGGAGAACCCTCTGTTTCCAAAGGAAAGATTCAATGATCTCATCTCCTGTATCAgaATAGAAAATCTGTATGAAAGAGCGTTGTATATTCGAAAGATCCTTCTGACTGCACCCAGATCAGTGCTTGTGGTCATGCGATATCTGTTCGCCTTCCTCAACCACTTGTCCCAGTACAGTGATGAAAACATGATGGACCCCTATAATCTGGCCATCTGCTTTGGGCCGACCCTGATGCCCACTCCCGAAACCCAGGACCAGGTGTCCTGCCAGGCCCACGTCAATGAGGTCATCAAGACCATCATCATCCACCACGAAACCATCTTTCCTGACTCCAAGGAGCTAGACGGCCCCCTGTATGAGAAGTGTATGGCAGGTGGAGATTATTGTGAGAGTCCATACAGTGAACATGGAGCTCTTGAAGAGGTTGATCAGGATGGAGGAGCAGAGACCCACACCAGTGAGGATGaGGGAGAGCCCATTGAAGCCATCGCCAAGTTCGATTACGTGGGCCGCTCTGCGCGGGAGCTGTCATTTAAGAAGGGGGCATCTCTGCTGCTGTACCAGAGAGCATCCGACGATTGGTGGGAGGGCAGACACAATGGCATAGATGGACTCGTGCCTCACCAGTACATTGTTGTTCAGGATATGGACGACACGTTCTCAGACACTTTGAGTCAGAAAGCGGACAGTGAGGCCAGCAGTGGACATGGAGGAGAGGAGAAGTGCTCCAGCAGAGACATGGGCTCTCCGACAGACAGCAGACTGCCTGATGCCTACATTAGCAGGCACAGAAAGAGAAGTGACCCTCCAACCCGCAGACCTCCGGCTCGCCCAACTGACACCCACTGCCTCGTCCACCCATCTCATCACAGCAGCCATACCAACCCAGATCTGGGCTCTCCGGTGATGGGCCACTACAGCCCGCGGGACATGCTGAGGGGCCGAGGACACATGCCCATGGACAGTCCAGAGAGACGACGGCGAACAGGCCATGGCAGCCTGACCAACATCAGCCGCCACGAGTCCATTAAGAAGATGGAGAGTCCACCCATCCGCCGGTCCACCTCTTCAGGACAGTACAGCAGCTTCAACGAGCCTCATGTCAAGAGTCTGGACCCCGAGAGCATCGCACAGGACATAGAGGAGACGATGAACACTGCTCTGAATGAGCTGAAGGAACTGGAGCGCCAGAGCTCTGCCAAACACGCCCCAGACGTGGTGCTGGACACCCTGGAGCAGATGAAGAACGCTCCCACCCCGGCCAGCTCCACTGAGTCCCTCAGCCAACTCCACGGCCTCCTGCTGCGGCCTGCTGGCACTGAGCTACACATGCGCCGCAGCACCAGCTCCTCCAGCGACACCATGAGCACCTTCAAGCCTGCGGTGGCGCCTCGTATGGGGGTACAGCTCAAACCGCCCACCCTGAGGCCCAAACCCATGGTGCCGGTGCCCAAAACTGGAGCGGCGCAGCATCCGGCAGCTCCGCCACAGGATCCATTGGACAAATCCTGCACCATGTGAGGATTTTTCAGGGACGGAGAGGAGAAATCGTGAGATTTGGACCACTGCAGTCAGAGCCAGAGTCATTTCTTCATTCTGCGACATTTCATTCGATTTGGAAAGTAGACTAAGCAAATATAGGTATTTAAAGTACTGTGGTTCAGCCATTTttggggatagttcacccataaatgaatatttactcgTCTTTCAAACCTGTATGATTTAGGTTTCTTCTTCCgctgaacgcaaaagaagatattttgaagaatgctcttGAAATTCCATAAGAATGCTGTAGAAGTCAATGGGGATTCAAAGACAGTTCTTTGGCTACTTAAAGTAATAGTTAACCCAAAAAGGAaataatctgtcatcatttactcattcttcacttattacaaacctgtttgaccttcttctgttcaacaaaaaagaagaaa
>TCONS_00026287
ATGTTGAAAATGTCGAATCCTCCTGTGAAGTTCAAAAAGGATAAAGAGATCATTGTAGAGTACGAGACTCAAGTCAAAGAGATTCGAGCTCAACTGGTGGAGCAGCAGAAATGTCTAGAGCAGCAGACCGACATGAGGGTCCAGCTCCTTCAGGACCTCCAGGATTTTTTCCGCAAGAAGTCTGAGATCGAGATGGAGTATTCACGAAACCTGGAGAAACTCGCCGAACGCTTCATGGCCAAGACAAGGAGCACCAAGGACCACCAGCAATATAAGAAAGACCAGAATCTGCTGTCCCCGGTGAACTGCTGGTACCTGTTGCTGAACCAGGTCCGACGAGAGAGCAAAGACCACGCAACCCTGAGTGACATTTATCTGAATAATGTCATCATGAGATTCATGCAGATCAGTGAAGACTCCACACGTCTTATGAAAAAGAGTAAAGAAATCACCTTTCAGCTGCAAGAAGATTTGATGAAAGTCCTCAACGAGCTCTACACGGTGATGAAGACCTATCATATGTATCACACAGAGAGCATCAGTGCTGAGGGTAAACTGAAGGAGGCTGAGAAGCAGGAGGAGAAGCAGATCGGCCGCGTTGGAGATCCAGTTTTCCACATCCGGCTGGAGGACAGACACCAGAGACGCAGCTCCGTCAAGAAGATCGAGAAGATGAAGGAGAAGAGGCAGGCGAAGTATTCGGAGAACAAGCTGAAGTCGATCAAAGCTCGGAACGAATACCTGCTGACGCTGGAAGCCACTAATGCTTCAATCTTCAAGTATTACATCCACGACTTGTCTGATTTAATAGACTGTTGTGATCTGGGATATCATGCCTCTCTGAACCGGGCATTGCGGACCTACCTCTCAGCCGAATATAACCTGGAGACGTCCCGTCACGAGGGCCTGGACATCATAGAGAATGCAGTGGACAGTCTGGACCCCCGTAGTGACCGCCAGCGCTTCATGGAAATGTACCCGACCGCCTTCTGCCCTCCCGTCAAATTTGAGTTTCAGGCACATATGGGAGACGAGGTTTGTCAGATCACGGCACAGCCTCCTGTTCAGGCTGAGCTCCTCCTGAGGTTCCAGCAGCTTCAATCCCGCCTCACCACACTGAAGATCGAGAACGAAGAGATCAAGAAGACGTCTGAGGCGACACTTACTACCATCCAGGACATGGTGACGGTTGAGGATTATGACGTATCTGAATGTTTCCATCATAGCCGCTCAACTGAATCAGTTAAATCTACCGTGTCTGAAACCTACCTCAGCAAGCCGAGCATCGCCAAGAGACGCGCCAACCAGCAGGAGACTGAGCAGTTCTATTTTATGAAGTTTCGCGAGTATCTGGAGGGCAGCAATCTCATCACTAAACTCCAGGCAAAGCATGATCTACTGAAGAGAACCCTCGGTGACGGTTACCGGCCTGAATATGCAACTACAAGTCGTGGACGAAGGAACTCGCACGCAAGACATCAGGACTCTGGTCAAGCAATACCTCGAGTTGTTGAGAGCTGTATTCGATTCATCAACCTGTATGGCCTCCAACATCAAGGAATATTCAGAGTGCCTGGATCTCAAGTTGAAGTCAATGATATCAAGAATTCATTtgagagagGGAACGATCCACTGACAGACGAAGAGAATAACCACGATATAAACTCTGTCGCTGGCGTTTTGAAACTCTACTTTCGGGGCTTGGAGAACCCTCTGTTTCCAAAGGAAAGATTCAATGATCTCATCTCCTGTATCAgaATAGAAAATCTGTATGAAAGAGCGTTGTATATTCGAAAGATCCTTCTGACTGCACCCAGATCAGTGCTTGTGGTCATGCGATATCTGTTCGCCTTCCTCAACCACTTGTCCCAGTACAGTGATGAAAACATGATGGACCCCTATAATCTGGCCATCTGCTTTGGGCCGACCCTGATGCCCACTCCCGAAACCCAGGACCAGGTGTCCTGCCAGGCCCACGTCAATGAGGTCATCAAGACCATCATCATCCACCACGAAACCATCTTTCCTGACTCCAAGGAGCTAGACGGCCCCCTGTATGAGAAGTGTATGGCAGGTGGAGATTATTGTGAGAGTCCATACAGTGAACATGGAGCTCTTGAAGAGGTTGATCAGGATGGAGGAGCAGAGACCCACACCAGTGAGGATGaGGGAGAGCCCATTGAAGCCATCGCCAAGTTCGATTACGTGGGCCGCTCTGCGCGGGAGCTGTCATTTAAGAAGGGGGCATCTCTGCTGCTGTACCAGAGAGCATCCGACGATTGGTGGGAGGGCAGACACAATGGCATAGATGGACTCGTGCCTCACCAGTACATTGTTGTTCAGGATATGGACGACACGTTCTCAGACACTTTGAGTCAGAAAGCGGACAGTGAGGCCAGCAGTGGACATGGAGGAGAGGAGAAGTGCTCCAGCAGAGACATGGGCTCTCCGACAGACAGCAGACTGCCTGATGCCTACATTAGCAGGCACAGAAAGAGAAGTGACCCTCCAACCCGCAGACCTCCGGCTCGCCCAACTGACACCCACTGCCTCGTCCACCCATCTCATCACAGCAGCCATACCAACCCAGATCTGGGCTCTCCGGTGATGGGCCACTACAGCCCGCGGGACATGCTGAGGGGCCGAGGACACATGCCCATGGACAGTCCAGAGAGACGACGGCGAACAGGCCATGGCAGCCTGACCAACATCAGCCGCCACGAGTCCATTAAGAAGATGGAGAGTCCACCCATCCGCCGGTCCACCTCTTCAGGACAGTACAGCAGCTTCAACGAGCCTCATGTCAAGAGTCTGGACCCCGAGAGCATCGCACAGGACATAGAGGAGACGATGAACACTGCTCTGAATGAGCTGAAGGAACTGGAGCGCCAGAGCTCTGCCAAACACGCCCCAGACGTGGTGCTGGACACCCTGGAGCAGATGAAGAACGCTCCCACCCCGGCCAGCTCCACTGAGTCCCTCAGCCAACTCCACGGCCTCCTGCTGCGGCCTGCTGGCACTGAGCTACACATGCGCCGCAGCACCAGCTCCTCCAGCGACACCATGAGCACCTTCAAGCCTGCGGTGGCGCCTCGTATGGGGGTACAGCTCAAACCGCCCACCCTGAGGCCCAAACCCATGGTGCCGGTGCCCAAAACTGGAGCGGCGCAGCATCCGGCAGCTCCGCCACAGGATCCATTGGACAAATCCTGCACCATGTGA

Function

symbol description
srgap1a Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human SRGAP1 (SLIT-ROBO Rho GTPase activating protein 1).

GO:

id name namespace
GO:0030336 negative regulation of cell migration biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-284 Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human SRGAP1 (SLIT-ROBO Rho GTPase activating protein 1).

Ensembl:

ensembl_id ENSDARG00000007461

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026286 False 3212 mRNA 0.51 18 12867400 12957451
TCONS_00026287 True 3222 mRNA 0.52 22 12867822 13056801

Neighbor

gene id symbol gene type direction distance location
XLOC_013284 NA coding downstream 3877 12862604 ~ 12863523 (-)
XLOC_013283 parp12a coding downstream 9384 12839126 ~ 12858016 (-)
XLOC_013282 BX247877.1 coding downstream 101948 12760802 ~ 12765452 (-)
XLOC_013280 hipk2 coding downstream 213389 12464461 ~ 12654011 (-)
XLOC_013281 AL929229.2 coding downstream 335240 12532046 ~ 12532160 (-)
XLOC_013287 rxylt1 coding upstream 6409 13063210 ~ 13121983 (-)
XLOC_013288 NA coding upstream 21042 13077843 ~ 13114318 (-)
XLOC_013289 C7H19orf12 coding upstream 66922 13123723 ~ 13133268 (-)
XLOC_013290 klhl36 coding upstream 138944 13195745 ~ 13203401 (-)
XLOC_013291 BX511124.1 coding upstream 224853 13281654 ~ 13287651 (-)
XLOC_013384 BX323829.1 misc upstream 6485301 19542102 ~ 19542231 (-)
XLOC_013278 NA non-coding downstream 504071 12358383 ~ 12363329 (-)
XLOC_013277 NA non-coding downstream 513126 12346296 ~ 12354274 (-)
XLOC_013293 BX890576.1 non-coding upstream 420301 13477102 ~ 13478222 (-)
XLOC_013294 BX950204.1 non-coding upstream 487449 13544250 ~ 13544367 (-)
XLOC_013300 NA non-coding upstream 1707102 14763903 ~ 14765883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_08139954_08212837 SRGAP1A, SRGAP1 coding CI01000013 null 8139954 ~ 8212837 (+)
bowfin (Amia calva) AMCG00006857 NA coding CM030134.1 CM030134.1 23207193 ~ 23282722 (+)